View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_6 (Length: 601)
Name: NF5706_low_6
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 576
Target Start/End: Complemental strand, 27938031 - 27937466
Alignment:
| Q |
17 |
cacgaacgccagacaccatactgacac-----tgacacatggaaacttgtagtaatttatataaataaaaaagatttgaatgtaatcacatgtgttaata |
111 |
Q |
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| T |
27938031 |
cacgaacgccagacaccatactgacacgacactaacacatagaaactcgtagtaatttataaaaatgaaaaatatt-gaatataatcacatgtgttagta |
27937933 |
T |
|
| Q |
112 |
ttgtgttggcatcaaactctgacacatgtcagacactagcgctttgatatgaagtatcggtgctatgtaaacattggcggaggcaggggggttaagaacc |
211 |
Q |
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| T |
27937932 |
ttatgttggcatcaaattctgacacatgtcagacactagcgctttgatctgaagtgtcggtgctatgtaaacaatggcggaggcagggggtttaagaacc |
27937833 |
T |
|
| Q |
212 |
ctttaacttagaaaaatacaaatatacctttatatattttgcattttgagcctcttgagtatttcttttacactgctgatctttt-ggctccagaactca |
310 |
Q |
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| T |
27937832 |
ctttaacttagaaaaatgaaaatatacccttatatattttgcattttgagcctcttgaatatttcttttacattactaatccaaaaggctgaagaactca |
27937733 |
T |
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| Q |
311 |
agagtttgaaccccttagctagggtctagctccgccattgtctacaggttctagttattttcaagacgttgccttttgtcgtgtctgtgtatatatgtgg |
410 |
Q |
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||||||||||||||| |||||| | | |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
27937732 |
agagtttgaacccctaagctagagattggctccgccattgtctacaggttttagttattttcaagacgttgtcttttgtcgtgtctgtgtatatgtgtgg |
27937633 |
T |
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| Q |
411 |
tgctttgtgagtgatccagggttattaaaaagatcatgattgctatcttggctgtgccaagatggtttttgatgtcgctgtaattgcaatgtgactctag |
510 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27937632 |
tgctttgtgagtgatccagggttattaaatagatcatgattgctatatcggccgtgccaaga-agtttttgatgtcgctgtaattgcaatgtgactctag |
27937534 |
T |
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| Q |
511 |
ttgatgc--tgtatagttgcatttgagtgcaatttgtagcaatatcaaggattgcaaccacaatttta |
576 |
Q |
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| T |
27937533 |
ttgaggctgtgtatagtttcattttagtgcaatttgtagcaatatcaaggattgcaaccgcaatttta |
27937466 |
T |
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