View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_63 (Length: 236)
Name: NF5706_low_63
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_63 |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 51483403 - 51483183
Alignment:
| Q |
16 |
atgtgctgctatattgctatatatctacatcacttatgcaagacaatttgcatccacggtaacaaagaaaatggcttactccaaaaagcattcattcctc |
115 |
Q |
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| T |
51483403 |
atgtgctgctatattgctatatatctacatcacttatgcaagacaatttgcatccacggtaacaaagaaaatggcttactccaaaaagcattcattcctc |
51483304 |
T |
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| Q |
116 |
ttgatttccactctcctcatgattctccaactccaattatcctttacaaatgctatgattaaaggtggctattggtattctgatagtggccttgcagctt |
215 |
Q |
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| T |
51483303 |
ttgatttccactctcctcatgattctccaactccaattatcctttacaaatgctatgattaaaggtggctattggtattctgatagtggccttgcagctt |
51483204 |
T |
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| Q |
216 |
ctgatattaatacctcttatt |
236 |
Q |
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| T |
51483203 |
ctgatattgatccctcttatt |
51483183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 51468436 - 51468276
Alignment:
| Q |
76 |
aacaaagaaaatggcttactccaaaaagcattcattcctcttgatttccactctcctcatgattctccaactccaattatcctttacaaatgctatgatt |
175 |
Q |
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| T |
51468436 |
aacaaaaaaaatggcttactccaaaaagcattcgttcctcttgatttccactctccttatgattctccaactccaattttcctctacaaacgctgccatt |
51468337 |
T |
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| Q |
176 |
aaaggtggctattggtattctgatagtggccttgcagcttctgatattaatacctcttatt |
236 |
Q |
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| T |
51468336 |
aaaggtggctattggtattctgatagtgaccttgcagtttctgacattgatccctcttatt |
51468276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 51458122 - 51457962
Alignment:
| Q |
76 |
aacaaagaaaatggcttactccaaaaagcattcattcctcttgatttccactctcctcatgattctccaactccaattatcctttacaaatgctatgatt |
175 |
Q |
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| T |
51458122 |
aacacagaaaatggcctactcaaaaaaaccttcattcctcttgatttctactctcctcgtgattttccaactccaattctcttctgcaaaagctgaaatt |
51458023 |
T |
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| Q |
176 |
aaaggtggctattggtattctgatagtggccttgcagcttctgatattaatacctcttatt |
236 |
Q |
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| T |
51458022 |
aaaggtggctattggtattctgatagtggccttgcagtttctgacattgatccctcttatt |
51457962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 48424898 - 48424689
Alignment:
| Q |
16 |
atgtgctgctatattgctatatatctacatcacttatgcaagacaatttgcatccacggtaacaaagaaaatggcttactccaaaaagcattcattcctc |
115 |
Q |
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| T |
48424898 |
atgtgctgctatattgctatatatctacatcactta--------------catccaccgcaacaaagaaaatggcttactccaaaaagcattcattcctc |
48424813 |
T |
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| Q |
116 |
ttgatttccactctcc---tcatgattctccaactccaattatcctttacaaatgctatgattaaaggtggctattggtattctgatagtggccttgcag |
212 |
Q |
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| T |
48424812 |
ttgatttccactctcctcatcatgattctacaactccaattattctctacaaacgcttccattaaaggtggctattggtattctgatagtggccttgcag |
48424713 |
T |
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| Q |
213 |
cttctgatattaatacctcttatt |
236 |
Q |
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|||||| ||| || ||||||||| |
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| T |
48424712 |
tttctgacattgatccctcttatt |
48424689 |
T |
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