View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_7 (Length: 555)
Name: NF5706_low_7
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_7 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 14 - 555
Target Start/End: Original strand, 38353269 - 38353812
Alignment:
| Q |
14 |
gaaggaaagatgctaacatgggaagagaggattcaagttttgaaaaatgtagccacagggattctatacctgcatgaaggttgggaagtcaaggttttgc |
113 |
Q |
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| T |
38353269 |
gaaggaaagatgctaacatgggaagagaggattcaagttttgaaaaatgtagccacagggattctatacctgcatgaaggttgggaagtcaaggttttgc |
38353368 |
T |
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| Q |
114 |
atagggatatcaaagcaagcaatgttctacttgacaaggatatgaatgctagattgggggattttggtttggctctcatgcatgagcatcacggacaagt |
213 |
Q |
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| T |
38353369 |
atagggatatcaaagcaagcaatgttctacttgacaaggatatgaatgctagattgggggattttggtttggctctcatgcatgagcatcacggacaagt |
38353468 |
T |
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| Q |
214 |
ggccagcacaacaaaagtactcggaacattaggatacattgctccagaagtgattcgaacaggaagagcatcaactatgtctgatgtatttgggtttgga |
313 |
Q |
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| T |
38353469 |
ggccagcacaacaaaagtactcggaacattaggatacattgctccagaagtgattcgaacaggaagagcatcaactatgtctgatgtgtttgggtttgga |
38353568 |
T |
|
| Q |
314 |
atattggtgttggaagtgatttgcggccgaagacctattgaagaacataagccagggctaattgaatgggtggagtccctaatggtgcttgatcaacttc |
413 |
Q |
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| T |
38353569 |
atattggtgttggaagtgatttgcggccgaagacctattgatgaacataagccagggctaatcgaatggatggagtccctaatggtgcttgatcaacttc |
38353668 |
T |
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| Q |
414 |
acagtgctgttgatgaaaggttgaaggctaagggaggatacaccattgaggaagctgagagattgcttcatttgggtttaca--gttcaaattcagaccc |
511 |
Q |
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| T |
38353669 |
acagtgctgttgatgaaaggttgaaggctaagggaggatacaccattgaggaagctgagagattgcttcatttgggtttacagtgttcaaattcagaccc |
38353768 |
T |
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| Q |
512 |
tagtgttagaccagtaatgagacaggttgtgaaaatgttagagg |
555 |
Q |
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| T |
38353769 |
tagtgttagaccagtaatgagacaggttgtgaaaatgttagagg |
38353812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 550
Target Start/End: Complemental strand, 38543540 - 38543003
Alignment:
| Q |
15 |
aaggaaagatgctaacatgggaagagaggattcaagttttgaaaaatgtagccacagggattctatacctgcatgaaggttgggaagtcaaggttttgca |
114 |
Q |
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| T |
38543540 |
aaggaaagatgctaacatgggaagagaggattcaagttttgaaaagcgtagccgcggggattctttacctgcatgaaggttgggaagttaaggtcttgca |
38543441 |
T |
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| Q |
115 |
tagggatatcaaagcaagcaatgttctacttgacaaggatatgaatgctagattgggggattttggtttggctctcatgcatgagcatcacggacaagtg |
214 |
Q |
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| T |
38543440 |
tagggatatcaaagcaaacaatgttctacttgacaaggacatgaatgctagattgggggattttggtttggctcttatgcatgagcatcatggacaagtt |
38543341 |
T |
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| Q |
215 |
gccagcacaacaaaagtactcggaacattaggatacattgctccagaagtgattcgaacaggaagagcatcaactatgtctgatgtatttgggtttggaa |
314 |
Q |
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| T |
38543340 |
gccaacacaacaaaagtattagggacattaggatacattgctccggaagtgattcgaacaggaaaagcatcgactatgtctgatgtgtttggctttggaa |
38543241 |
T |
|
| Q |
315 |
tattggtgttggaagtgatttgcggccgaagacctattgaagaacataagccagggctaattgaatgggtggagtccctaatggtgcttgatcaacttca |
414 |
Q |
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| T |
38543240 |
tattggtgttggaagtaatctgcgggcgaagacctattgaagaacataagccagggctaattgaatgggtggagtctctaatggtgcttgatcaattgga |
38543141 |
T |
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| Q |
415 |
cagtgctgttgatgaaaggttgaaggctaagggaggatacaccattgaggaagctgagagattgcttcatttgggtt--tacagttcaaattcagaccct |
512 |
Q |
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|| ||||||||||||||||||| || | | ||||||||| |||| || ||||||| ||||| |||||||||||||| | || ||| |||||||||| |
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| T |
38543140 |
caatgctgttgatgaaaggttggagacggaaggaggatactccatcgaagaagctgtgagatggcttcatttgggtttgttgtgtacaagttcagaccct |
38543041 |
T |
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| Q |
513 |
agtgttagaccagtaatgagacaggttgtgaaaatgtt |
550 |
Q |
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| T |
38543040 |
aacgttagaccaatgatgaggcaggttctgaaaatgtt |
38543003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 38547198 - 38547074
Alignment:
| Q |
57 |
aaaatgtagccacagggattctatacctgcatgaaggttgggaagtcaaggttttgcatagggatatcaaagcaagcaatgttctacttgacaaggatat |
156 |
Q |
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|||||||||| | || ||| |||| || |||||||||||||| | ||||||||||||| ||||| |||||||| ||||| ||||||| ||| ||||| |
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| T |
38547198 |
aaaatgtagctagtggaattttatatctacatgaaggttgggattttgaggttttgcatagagatattaaagcaagtaatgtgctacttggcaaagatat |
38547099 |
T |
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| Q |
157 |
gaatgctagattgggggattttggt |
181 |
Q |
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| T |
38547098 |
gaatgcaagaattggtgattttggt |
38547074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 3742481 - 3742558
Alignment:
| Q |
84 |
tgcatgaaggttgggaagtcaaggttttgcatagggatatcaaagcaagcaatgttctacttgacaaggatatgaatg |
161 |
Q |
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|||||||||| |||||||| || || |||||||||| || || |||||||||||| ||||||| ||||||||||||| |
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| T |
3742481 |
tgcatgaagggtgggaagtgaaagtggtgcatagggacattaaggcaagcaatgttttacttgataaggatatgaatg |
3742558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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