View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_71 (Length: 202)
Name: NF5706_low_71
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 32120007 - 32119855
Alignment:
| Q |
30 |
ttaaagatacatgacaaaataaaaagaaatagtgaaagagagacatggatacaatcataagcaatatgagacctaaagttatctttcattagaggaacca |
129 |
Q |
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| T |
32120007 |
ttaaagatacatgacaaaataaaaagaaatagtgaaagagagacatggatacaatcataagcaatttgagacctaaagttatctttcattagaggaacca |
32119908 |
T |
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| Q |
130 |
tatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatt |
182 |
Q |
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| T |
32119907 |
tatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatt |
32119855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 26572707 - 26572611
Alignment:
| Q |
86 |
ataagcaatatgagacctaaagttatctttcattagaggaaccatatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatt |
182 |
Q |
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| T |
26572707 |
ataagcaatttgagacctaatgttatctttcattagatgaacaatgtgagactgagttggctaggtattaatttgcaaggaacctgcaaagaccatt |
26572611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 38279001 - 38278953
Alignment:
| Q |
32 |
aaagatacatgacaaaataaaaagaaatagtgaaagagagacatggata |
80 |
Q |
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| T |
38279001 |
aaagatacatgataaaataaaaagaaatagtaaaggagagacattgata |
38278953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 38276886 - 38276852
Alignment:
| Q |
30 |
ttaaagatacatgacaaaataaaaagaaatagtga |
64 |
Q |
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| T |
38276886 |
ttaaatatacatgacaaaataaaaagaaatagtga |
38276852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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