View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5706_low_72 (Length: 202)
Name: NF5706_low_72
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_72 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 41230358 - 41230191
Alignment:
| Q |
19 |
cacgcgacagaggacaatacaatattttgttgtgaatgtattcccgtccattttccattcattgaccatttcaatcattataaatttaatagtatgtaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41230358 |
cacgcgacagaggacaatacaatatttggttgtgaatgtattcccgtccattttccattcattgaccatttcaatcattataaatttaatagtatgtaca |
41230259 |
T |
|
| Q |
119 |
aacaattgataaaaattgaaataaaattcctacagtttgtattctcttgctcttgaaatcaccttcat |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41230258 |
aacaattgataaaaattgaaataaaattcctacagtttgtattctcttgctcttgaaatcaccttcat |
41230191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 40858679 - 40858605
Alignment:
| Q |
65 |
tccattttccattcattgaccatttcaatcattataaatttaatagtatgtacaaacaattgataaaaattgaaa |
139 |
Q |
| |
|
||||||| |||||||| |||||| | |||||||||||||| ||| ||| ||||| || ||||||||||||||| |
|
|
| T |
40858679 |
tccatttcacattcatttaccattcaagtcattataaatttagtagcatgcacaaaaaaatgataaaaattgaaa |
40858605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University