View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_9 (Length: 516)
Name: NF5706_low_9
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 497
Target Start/End: Original strand, 47053663 - 47054144
Alignment:
| Q |
16 |
atcacaactgaaacaaagagagaaagggagcaaaggcaaagagacacacgagccaagctggaagagcacacactcttctctaagaagaaactaaacccta |
115 |
Q |
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| T |
47053663 |
atcacaactgaaacaaagagagaaagggagcaaaggcaaagagacacacgagccaagctggaagagcacacactcttctctaagaagaaactaaacccta |
47053762 |
T |
|
| Q |
116 |
atagagcttagggaacttagacgacgctgagttatgaaattctaagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacatt |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053763 |
acagagcttagggaacttagacgacgctgagttatgaaattctaagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacatt |
47053862 |
T |
|
| Q |
216 |
ggcagcttcatcagtctacaaaatgcttgtggcagcgctagctgacatgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtcc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053863 |
ggcagcttcatcagtctacaaaatgcttgtggcagcgctagctgacacgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtcc |
47053962 |
T |
|
| Q |
316 |
aaggtagaggcatcatagtaaagttcctaaatagtttatttctactttatagggacatagtcatggcacatgatcaacactaaaaattttaaccttgaag |
415 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47053963 |
aaggtagaggcatcatagtaaagttcctaaatagattatttctactttatagggacatagtcatggcacatgatcaacactaaaatttttaaccttgaag |
47054062 |
T |
|
| Q |
416 |
cattggaaagtaattaggagggaatggttttcatctgggtgagaatgtagagaagaaaggggacgaaggtgatagaagtaga |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47054063 |
cattggaaagtaattaggagggaatggttttcatctgggtgagaatgtagagaagaaaggggacgaaggtgatagaagtaga |
47054144 |
T |
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