View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5708-Insertion-2 (Length: 1160)
Name: NF5708-Insertion-2
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 554 - 1052
Target Start/End: Original strand, 40869681 - 40870186
Alignment:
| Q |
554 |
tcaaattgggtgtatatgcaacaaaaatatcatagccatagtaggcagaaaaatatatatgtaatgtaccccttgttctaggccatcagtgagaccagaa |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869681 |
tcaaattgggtgtatatgcaacaaaaatatcatagccatagtaggcagaaaaatatatatgtaatgtaccccttgttctaggccatcagtgagaccagaa |
40869780 |
T |
|
| Q |
654 |
tggtgacgccaattgaccctttgattgtggggtaagtgacctgaacgttgtgcctcaaagtagagaagggtttgtgacaaggcttggccatagttgaagg |
753 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
40869781 |
tggtgacgccaattgaccctttgattgtggggtaagtgacctgaacgttgtgcctcaaaatagagaagggtttgtgacaaggcttggccgtagttgaagg |
40869880 |
T |
|
| Q |
754 |
attcacaaaaaggaagaaagattgtaatgagagaaagtaagacaaagcatagtgtcaaagaccatgtattcttttcaactttgcttgtcttcatttctcc |
853 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869881 |
attcacaaaaaggaagaaagattgtaatgagagaaagtaagacaaagcatagtgtcaaagaccatgtattcttttcaactttgcttgtcttcatttctcc |
40869980 |
T |
|
| Q |
854 |
ctaacttgctaagactctatctctatatctcttcttctctagctatatatgagtgtt-atcatgtaatgaaattgttgatttcgactgttcgatcgaaat |
952 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40869981 |
ctaacttgctaagactctatctctatatctcttcttctctagctatatatgagtgttaatcatgtaatgcaattgttgatttcgactgttcgatcgaaat |
40870080 |
T |
|
| Q |
953 |
taatgataaaggatgtttaacgttgatttatagag-tttgtc-aaataaaaatatcattttctaga--gttatgtttgaac-gtctgatttc-atatacc |
1046 |
Q |
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| T |
40870081 |
taatgataaaggatgtttaacgttgatttatagagttttgtcaaaataaaaatatcgttttctagaaggttatgtttgaacggtctgatttcaatataac |
40870180 |
T |
|
| Q |
1047 |
gatcaa |
1052 |
Q |
| |
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|||||| |
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| T |
40870181 |
gatcaa |
40870186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Original strand, 40869152 - 40869630
Alignment:
| Q |
8 |
ccgtactctatagcagcccaagaaaggagagttacggtgaatgccatcggtagcccaaatttcacgttgtcccctgcatcatagtagcctcccaccaaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869152 |
ccgtactctatagcagcccaagaaaggagagttacggtgaatgccatcggtagcccaaatttcacgttgtcccctgcatcatagtagcctcccaccaaat |
40869251 |
T |
|
| Q |
108 |
ccacctaaatgtgtccacacnnnnnnnntgttgaaattgatactgaagtgaacgtaggcataacaaaatattgaataaatattcaatttaatctttgaaa |
207 |
Q |
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| T |
40869252 |
ccacctaaatgtgtccaca-aaaaaaaatgttgaaattgatactgaagtgaacgtaggcataacaaaatattgaataaatattcaatttaatctttgaaa |
40869350 |
T |
|
| Q |
208 |
ttgttggattatatctacccagtttcttacatcaacaataaaatgttaatcagatttatacatgaattgatatctacgcagactataataacattaagtt |
307 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869351 |
ttgtaggattatatctacctagtttcttacatcaacaataaaatgttaatcagatttatacatgaattgatatctacgcagactataataacattaagtt |
40869450 |
T |
|
| Q |
308 |
gatgataacatctttc-nnnnnnnnnnnttgatgataacacaaatacannnnnnnnngaagaaaataacacaaatccatttgaaattaaatcaaccttaa |
406 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869451 |
gatgataacatctttcaaaaaaaaaaaattgatgataacacaaatacatttttttttgaagaaaataacacaaatccatttgaaattaaatcaaccttaa |
40869550 |
T |
|
| Q |
407 |
ggatgtatttgaaaacatgctataactctaatgatcattttagaatattaataatgttggatactaagttgatacgatcc |
486 |
Q |
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| T |
40869551 |
ggatgtatttgaaaacatgctataactctaatgatcattttagaatattaataatgttggatactaagttgatacgatcc |
40869630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 621 - 721
Target Start/End: Original strand, 36272967 - 36273067
Alignment:
| Q |
621 |
accccttgttctaggccatcagtgagaccagaatggtgacgccaattgaccctttgattgtggggtaagtgacctgaacgttgtgcctcaaagtagagaa |
720 |
Q |
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||||||||||||| ||||| || ||||||||||| ||||||||||| || | ||| |||| ||||| |||||||||||||| |||||||| |||| |
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| T |
36272967 |
accccttgttctaaaccatctgtaagaccagaatgatgacgccaattcacacgttggttgtatggtaacctccctgaacgttgtgcttcaaagtaaagaa |
36273066 |
T |
|
| Q |
721 |
g |
721 |
Q |
| |
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| |
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|
| T |
36273067 |
g |
36273067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 7222526 - 7222581
Alignment:
| Q |
44 |
gtgaatgccatcggtagcccaaatttcacgttgtcccctgcatcatagtagcctcc |
99 |
Q |
| |
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| T |
7222526 |
gtgaatgccattggtagcccatatttcacattgtccccggcatcataatatcctcc |
7222581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 36272796 - 36272865
Alignment:
| Q |
47 |
aatgccatcggtagcccaaatttcacgttgtcccctgcatcatagtagcctcccaccaaatccacctaaa |
116 |
Q |
| |
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| T |
36272796 |
aatgccattggtaaaccaaatttcacatgatcacctgcatcatagtaccctccaaccaaatcaacctaaa |
36272865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 41915359 - 41915304
Alignment:
| Q |
47 |
aatgccatcggtagcccaaatttcacgttgtcccctgcatcatagtagcctcccac |
102 |
Q |
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|||||||| |||| |||||||||||| || ||||||||||||||||| || ||||| |
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| T |
41915359 |
aatgccattggtaacccaaatttcacattatcccctgcatcatagtaaccacccac |
41915304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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