View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5708-Insertion-3 (Length: 992)
Name: NF5708-Insertion-3
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708-Insertion-3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 500; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 564
Target Start/End: Original strand, 31377165 - 31377723
Alignment:
| Q |
8 |
gcttagaaatttgttatgaatgtcttcctaaagtcgtccattttatgagcacagttatttctgtcctccttaatcctaaatcaaaaaagataaagcaaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31377165 |
gcttagaaatttgttatgaatgtcttcctaaagtcgtccattttatgagcacagttatttctgtcctccttaatcctaaatcaaaaaagataaagcaaat |
31377264 |
T |
|
| Q |
108 |
aatcataatatacatctctttccttcattgatcactgagttcaaaattggaggaaaagcacccgtttgaagccaaaaacaagctgctaagaacacattat |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31377265 |
aatcgtaatatacatctctttccttcattgatcactgagttcaaaattggaggaaaagcacccgtttgaagccaaaaacaagctgctaagaacacattat |
31377364 |
T |
|
| Q |
208 |
tgccataagtatcatatcattagtcccaatattttgaatcaataatactgccaagaacacattgtttcttacaatatcattattatgagctgcggctgaa |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31377365 |
tgccgcaagtatcatatcattagtcccaatattttgaatcaataatactgccaagaacacattgtttcttacaatatcattattatgagctgctgctgaa |
31377464 |
T |
|
| Q |
308 |
ctacatttcatgtatctttttaagcttatagaagcaagaaagggacatataaatagtcccacattgacaacaaaagcgtgtatggcagtgtttataactt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31377465 |
ttacatttcatgtatctttttaagcttatagaagcaagaaagggacatataaatagtcccacattgacaacaaaagcgtgtatggcggtgtttataactt |
31377564 |
T |
|
| Q |
408 |
tcacggtgccgtcatagtgtacatgctacagtggagaattttatgaatgtatattatccaaaatataattcgtaagat--cccgctgtactggtttttgt |
505 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
31377565 |
tcacggtgccgtcacagtgtacatgttagagtggggaattttatgaatgtatattatccaaaatataattcgtaagatcccccgctgtactgttttttgt |
31377664 |
T |
|
| Q |
506 |
ctagtaattcaaatttattatgtctaactcatggtatttaattcattttaaaaatggat |
564 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31377665 |
ctaataattcaaatttattatgtctaactcatggtatttaattcattttaaaaatggat |
31377723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 560 - 992
Target Start/End: Original strand, 31377799 - 31378226
Alignment:
| Q |
560 |
tggataaaaccgtatgacttggtttatttnnnnnnnttgtatttatattaaatcggatggttcagttttaaaaacttctaaaacaactcatgactagtgt |
659 |
Q |
| |
|
||||||||| || |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31377799 |
tggataaaatcggatgatttggtttatttaaaaaaattgtatttctattaaatcggatggttcagttttaaaaacttctaaaacaactcatgactagtgt |
31377898 |
T |
|
| Q |
660 |
tatcatcnnnnnnnnnnnnnctcatgacgagtgtataatatatattgtgnnnnnnnncatatacttcatccgatcctattaacaagaaacaatttaaaaa |
759 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31377899 |
tatcatcaaaaaaataagaactcatgacgagtgtataatatatattgtgaaaaaaaacatatacttcatccgattctattaacaagaaacaatttaaaaa |
31377998 |
T |
|
| Q |
760 |
attgtttgccgtctacgttttctcgagaactttccacatctctcattcagcattaaattacagttctatctatcacacatgtttcattctccatttctct |
859 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31377999 |
attgtttgccgtctacgttttctcgagaactttccacatctctcattcagcattaaattacagttctatctatcacacatgtttcattctccatttctct |
31378098 |
T |
|
| Q |
860 |
ttcaatcaccaaattcctttgtatctttctatttgtgccatttggacactatccctctgccttcccatctttttccctacactcttcaatggagtctcga |
959 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31378099 |
ttcaatcaccaaattcc-ttgtatctttctatttgtgccatttggacactatccctctgccttcccatc-ttttccctacactcttcaatggagtctcga |
31378196 |
T |
|
| Q |
960 |
tattttgttttcttcaatttgcgttcccattct |
992 |
Q |
| |
|
|| ||||||| |||||||||||||||||||| |
|
|
| T |
31378197 |
ta-tttgttt--ctcaatttgcgttcccattct |
31378226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 750 - 874
Target Start/End: Original strand, 31393609 - 31393734
Alignment:
| Q |
750 |
aatttaaaaaattgtttgccgtctacgttttctcgagaactttccacatctctcattcagcattaaattacagttctatctatcacaca-tgtttcattc |
848 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||| | |||| || |||||||| |||| || |||||||||| |
|
|
| T |
31393609 |
aatttcaaaaattgtttgccccctactttttctcgagaactttccacatctctcattcagcttccaattgcacttctatctttcacccagtgtttcattc |
31393708 |
T |
|
| Q |
849 |
tccatttctctttcaatcaccaaatt |
874 |
Q |
| |
|
| | ||| |||||||||||||||||| |
|
|
| T |
31393709 |
ttcctttttctttcaatcaccaaatt |
31393734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 275 - 373
Target Start/End: Original strand, 30607141 - 30607241
Alignment:
| Q |
275 |
cttacaatatcattattatgagctgcggctgaactacatttcatgtatct--ttttaagcttatagaagcaagaaagggaca-tataaatagtcccacat |
371 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||| ||||||| |||||||| || |||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30607141 |
cttacagtatcat-attatgagctgctgctgaattacattttatgtatcttcttctaagcttaaagaagcaagaaagggacactataaatagtcccacat |
30607239 |
T |
|
| Q |
372 |
tg |
373 |
Q |
| |
|
|| |
|
|
| T |
30607240 |
tg |
30607241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 750 - 874
Target Start/End: Original strand, 30607771 - 30607894
Alignment:
| Q |
750 |
aatttaaaaaattgtttgccgtctacgttttctcgagaactttccacatctctcattcagcattaaattacagttctatctatcacacatgtttcattct |
849 |
Q |
| |
|
||||| |||||||||||||| || | ||||||| |||||||||||||||||||||||||| || |||| | || ||||| |||| | |||||||||| |
|
|
| T |
30607771 |
aatttgaaaaattgtttgccacctgcattttctcaagaactttccacatctctcattcagc-ttcaattgtacttttatctttcacccgtgtttcattcg |
30607869 |
T |
|
| Q |
850 |
ccatttctctttcaatcaccaaatt |
874 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
30607870 |
tcttttctctttcaatcaccaaatt |
30607894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 290 - 404
Target Start/End: Original strand, 31395159 - 31395276
Alignment:
| Q |
290 |
ttatgagctgcggctgaactacatttcatgtatcttttt--aagcttatagaagcaagaaagggacat-ataaatagtcccacattgacaacaaaagcgt |
386 |
Q |
| |
|
||||| ||||| |||||| ||| ||| | ||||||| || ||||||| ||||||||||||||| ||| ||||||| |||||||| ||||| ||| | |
|
|
| T |
31395159 |
ttatgtgctgctgctgaattaccttttacgtatcttcttccaagcttaaagaagcaagaaaggggcattataaataatcccacatcgacaaacaaaacta |
31395258 |
T |
|
| Q |
387 |
gtatggcagtgtttataa |
404 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31395259 |
gtatggcagtgtttataa |
31395276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 720 - 755
Target Start/End: Complemental strand, 41569246 - 41569211
Alignment:
| Q |
720 |
atacttcatccgatcctattaacaagaaacaattta |
755 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41569246 |
atacttcatccgatcctatttacaagaaacaattta |
41569211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University