View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5708-Insertion-5 (Length: 278)

Name: NF5708-Insertion-5
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5708-Insertion-5
NF5708-Insertion-5
[»] chr8 (1 HSPs)
chr8 (6-278)||(33428790-33429070)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 33429070 - 33428790
Alignment:
Q  6 catctacctatccaatgtttgattttcacattgcacaactttttacatctctgttaagccttgcagagtaggaaatagttttgcagtttgctgacaccct 105  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||    
T  33429070 catctgcctattcaatgtctgattttcacattgcacaactttttacatctctgttgagtcttgcagagtaggaaatagttttgcagtttactgacaccct 33428971  T
Q  106 cctgatgtgggtttctaagtggatttgtttagaa--------atgcttctctgtttactatggaactaaatacagttgtgtatgcgattgatcaatgctc 197  Q
    ||||||||||||||||||||||||||||||||||        |||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  33428970 cctgatgtgggtttctaagtggatttgtttagaacattgggcatgcttatctctttactatggaactaaatacatttgtgtatgtgattgatcaatgctc 33428871  T
Q  198 gattttgaaggaccataacatttggattggtccttcaactcaaatcatgttattatttgtctctttgtaatagatggaata 278  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  33428870 gattttgaaggaccataacgattggatttgtccttcaactcaaatcatgttattatttgtttcttcgtaatagatggaata 33428790  T

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