View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5708_high_13 (Length: 242)
Name: NF5708_high_13
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 29567083 - 29566864
Alignment:
| Q |
4 |
agccacttttttatgtaggatctgggggtttggcttagaagcataatgaattgctgatgtgatcatggattcacttgtaatcattgtttcaaatttcaat |
103 |
Q |
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| T |
29567083 |
agccacttttttatgtaggatctgggggtttggcttagaagcataatgaattgctgatgtgatcatggattcacttataatcattgtttcaaattgctat |
29566984 |
T |
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| Q |
104 |
tgcagtcgcacttgtggtcaagctgtgaacttttacattgtcggaaaatgtggccgatgtgactaaaattgtgtttctgacacccttgtagagacctcaa |
203 |
Q |
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| T |
29566983 |
tgcagtcgcacttgtggtcacgctgtgaacttttacattgtcggaaaatgtggccgatgtgactaaaattgtgtttgtgacacccttgtagagacctcaa |
29566884 |
T |
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| Q |
204 |
aaccctctaaagtgcggctg |
223 |
Q |
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|||||||||||||||||||| |
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| T |
29566883 |
aaccctctaaagtgcggctg |
29566864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 32431902 - 32432049
Alignment:
| Q |
15 |
tatgtaggatctgggggtttggcttagaagcataatgaattgctgatgtgatcatggattcacttgtaatcattgtttcaaatttcaattgcagtcgcac |
114 |
Q |
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| T |
32431902 |
tatgtaggatctaggggtttggcttagaagcataataaattgctgatctgatcgtagttgcacttgtaatcgtgattttaaattgcgattgcagttgcac |
32432001 |
T |
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| Q |
115 |
ttgtggtcaagctgtgaacttttacattgtcggaaaatgtggccgatg |
162 |
Q |
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| T |
32432002 |
ttgtggtcacactgtgaacctatacattgtggaaaaatgtggccgatg |
32432049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 27520262 - 27520053
Alignment:
| Q |
15 |
tatgtaggatctgggggtttggcttagaagcataatgaattgctgatgtgatcatggattcacttgtaatcattgtttcaaatttcaattgcagtcgcac |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| | | |||||||||||||||||| ||||| | ||||||||||||| |
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| T |
27520262 |
tatgtaggatctgggggtttggctaagaagcataataaattgttgatgtgatcatagttgcacttgtaatcattgttttaaattgcgattgcagtcgcac |
27520163 |
T |
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| Q |
115 |
ttgtggtcaagctgtgaacttttacattgtcggaaaatgtggccgatgtgactaaaattgtgtttctgacacccttgtagagacctcaaaaccctctaaa |
214 |
Q |
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| T |
27520162 |
ttgtggtcacgatgtgaacctttacattgtggggaaatgcggccgatgtgactaaaattgtgtttgtgacgcccttgtagagacctcaaaatcctctaaa |
27520063 |
T |
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| Q |
215 |
gtgcggctgc |
224 |
Q |
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|||||||| |
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| T |
27520062 |
aagcggctgc |
27520053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 27483139 - 27483343
Alignment:
| Q |
20 |
aggatctgggggtttggcttagaagcataatgaattgctgatgtgatcatggattcacttgtaatcattgtttcaaatttcaattgcagtcgcacttgtg |
119 |
Q |
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| T |
27483139 |
aggatctgagggtttggctaagaagcataataaattgttgatgtgatcatagttgcacttgtaatcattgttttaaattgcgattgcagtcgcacttgtg |
27483238 |
T |
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| Q |
120 |
gtcaagctgtgaacttttacattgtcggaaaatgtggccgatgtgactaaaattgtgtttctgacacccttgtagagacctcaaaaccctctaaagtgcg |
219 |
Q |
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|||| | ||||||| |||||||||| | |||| ||| |||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||| ||| |
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| T |
27483239 |
gtcacgatgtgaacctttacattgtggtgaaatatggacgatgtgactaaaattgtgtttgtgatgcccttgtatagacctcaaaatcctctaaaaagcg |
27483338 |
T |
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| Q |
220 |
gctgc |
224 |
Q |
| |
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||||| |
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| T |
27483339 |
gctgc |
27483343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 18987490 - 18987660
Alignment:
| Q |
14 |
ttatgtaggatctgggggtttggcttagaagcataatgaattgctgatgtgatcatggattcacttgtaatcattgtttcaaatttcaattgcagtcgca |
113 |
Q |
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||||||||||| ||||||||||||| ||||||||||| || || |||||||||||| | | |||||||||||||||||| ||||| | |||||||||||| |
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| T |
18987490 |
ttatgtaggatatgggggtttggctaagaagcataataaactgttgatgtgatcatagttgcacttgtaatcattgttttaaattgcgattgcagtcgca |
18987589 |
T |
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| Q |
114 |
cttgtggtcaagctgtgaacttttacattgtcggaaaatgtggccgatgtgactaaaattgtgtttctgac |
184 |
Q |
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| T |
18987590 |
cttgtggtcaagatgtgaaccattacattgtggggaaatgcagccgatgtgactaaaattgtgtttgtgac |
18987660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 25519748 - 25519793
Alignment:
| Q |
78 |
ttgtaatcattgtttcaaatttcaattgcagtcgcacttgtggtca |
123 |
Q |
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|||||||||| |||| ||||| | |||||||||||||||||||||| |
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| T |
25519748 |
ttgtaatcatggttttaaattactattgcagtcgcacttgtggtca |
25519793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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