View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5708_high_2 (Length: 702)
Name: NF5708_high_2
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 415 - 696
Target Start/End: Complemental strand, 29650290 - 29650009
Alignment:
| Q |
415 |
agaaatagaaagagagagtcaaatgaatttaagaaaaagtggtgttagtttaatgtcaatgtcacataattaagagtatgaaaccctagccatgtgtgtg |
514 |
Q |
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| T |
29650290 |
agaaatagaaagagagagtcaaatgaatttaagaaaaagtggtgttagtttaatgtcaatgtcacataattaagagtatgaaaccctagccatgtgtgtg |
29650191 |
T |
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| Q |
515 |
tgtataaaagagctagtttgcttcacaatcctaacaaacataacacaaaagcacattgatcatataatgaaaatggcttcttcatttagtttcttaacac |
614 |
Q |
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| T |
29650190 |
tgtataaaagagctagtttgcttcacaatcctaacaaacataacacaaaagcacattgatcatataataaaaatggcttcttcatttagtttcttaacac |
29650091 |
T |
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| Q |
615 |
tctttgtgttattttgtgtctacattcccataggaaccatgtctttctcaatgaaattaatcccacgagtaacctttgattc |
696 |
Q |
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| T |
29650090 |
tctttgtgttattttgtgtctacattcccataggaaccatgtctttctcaatgaaattaatcccacgagtaaactttgattc |
29650009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 29650654 - 29650442
Alignment:
| Q |
21 |
tagcatttaaaagaaactaaattttagaaaatgaaaacataaaatcttttccgaatgcaagcaggagttatttctattgggacccttgccttgctttgaa |
120 |
Q |
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| T |
29650654 |
tagcatttaaaagaaactaaattttagaaaatgaaaacataaaatcttttccgaatgcaagcaggagttatttctattgggacccttgccttgctttgaa |
29650555 |
T |
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| Q |
121 |
ttccttatgttcacatttcgtcaggttttgtttcttctcaaaattgaatttgttcataccttaatttattctaatgaactcaaaagagatatatgagatt |
220 |
Q |
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| T |
29650554 |
tttcttatgttcacatttcgtcaggttttgtttcttcacaaaattgaatttgttcacaccttaatttattctaatgaactcaaaagagatatctgagatt |
29650455 |
T |
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| Q |
221 |
aatagaatatagc |
233 |
Q |
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| T |
29650454 |
aatagaatatagc |
29650442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 29650343 - 29650290
Alignment:
| Q |
331 |
ggcagtgcttgaatgtgaaccattataacgtgagaaagttgaagttgttaaaca |
384 |
Q |
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| T |
29650343 |
ggcagtgcttgaatgtgaaccattataacgtgagaaagttgaagttgttaaaca |
29650290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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