View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5708_high_3 (Length: 526)
Name: NF5708_high_3
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 32983189 - 32982918
Alignment:
| Q |
12 |
atgaatgaaaagataaaaggacaagagtggcataaaacggataaggatagagaaagttaccaaaagtactatataaaggacacttttatccactaacaaa |
111 |
Q |
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| T |
32983189 |
atgaatgaaaagataaaaggacaagagtggcataaaacggataaggatagagaaagttaccaaaagtactatataaaggacacttttatccactaacaaa |
32983090 |
T |
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| Q |
112 |
gggagtcttcagctaaattttaacttggttttgagaaccctagctgccacctttcatcactttctcattttccatttcaaatcattacattcaagaccat |
211 |
Q |
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| T |
32983089 |
gggagtcttcagctaaattataacttggttttgagaaccctagctgccacctttcatcactttctcattttccatttcaaatcattacattcaagaccat |
32982990 |
T |
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| Q |
212 |
tgaagctccatgtttaaagagcaagcattagatctgttgcatcagcctgtgacaactctgcaactttgtata |
283 |
Q |
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| T |
32982989 |
tgaagctccatgtttaaagagcaagcattagatctgttgcatcagcctgtgacaactctgcaactttgtata |
32982918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 292 - 509
Target Start/End: Complemental strand, 32982862 - 32982644
Alignment:
| Q |
292 |
gtaatatatatggattgaagttatcattttcttatctttccatgttttcatgtaagatcactatgagctaaatatttctttggtttagaaataacataat |
391 |
Q |
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| T |
32982862 |
gtaatatatatggattgaagttatcattttcttatctttccatgttttcatgtaagatcactatgagctaaatatttctttggtttagaaataacataat |
32982763 |
T |
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| Q |
392 |
gttttgattgacc-nnnnnnnnnncataatgttttgttttacgttcttattatcttggtttttcattatatggttgtgagaataaattttattgaagttg |
490 |
Q |
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| T |
32982762 |
gttttgattgaccaaaaaaaaaaacataatgttttattttacgttcttattatcttggtttttcattatatggttgtgagaataaattttattgaagttg |
32982663 |
T |
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| Q |
491 |
tgttacattatgaatgttg |
509 |
Q |
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| T |
32982662 |
tgtgacattatgaatgttg |
32982644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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