View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5708_high_8 (Length: 322)

Name: NF5708_high_8
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5708_high_8
NF5708_high_8
[»] chr5 (5 HSPs)
chr5 (1-312)||(29567213-29567524)
chr5 (138-268)||(29249916-29250044)
chr5 (268-312)||(29426250-29426294)
chr5 (33-104)||(29169206-29169278)
chr5 (44-88)||(29250082-29250127)
[»] chr4 (4 HSPs)
chr4 (3-268)||(18987002-18987267)
chr4 (3-148)||(27520486-27520633)
chr4 (3-100)||(27471463-27471561)
chr4 (275-308)||(18986949-18986982)
[»] chr7 (1 HSPs)
chr7 (184-233)||(43712736-43712785)
[»] chr3 (1 HSPs)
chr3 (152-228)||(25519603-25519677)
[»] chr2 (1 HSPs)
chr2 (166-235)||(10608577-10608646)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 29567213 - 29567524
Alignment:
Q  1 caacaaaatgcttgaaaggaagagtatttattcttacctagattcggtaaataaaaaccaaaggaaaaatgcagtggagagaagcacactacacagttga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  29567213 caacaaaattcttgaaaggaagagtatttattcttacctagatccggtaaataaaaacaaaaggaaaaatgcagtggagggaagcacactacacagttga 29567312  T
Q  101 tcaatcatctttttacttcagatatgtatatattgataagggaaagtctacttattacattctactacattatttatgcagatatattctgatataacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29567313 tcaatcatctttttacttcagatatgtatatattgataagggaaagtctacttattacatcctactacattatttatgcagatatattctgatataacca 29567412  T
Q  201 attacacgattgtgcaggtgtgaatagatattattctgcgatatgcaatttagtacaaaatgttaccagtactgcagcgtatccgaatttgaacaaacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29567413 attacacgattgtgcaggtgtgaatagatattattctgcgatatgcaatttagtacaaaatgttaccagtactgcagcgtatccgaatttgaacaaacca 29567512  T
Q  301 ctactttctgtg 312  Q
    ||||||||||||    
T  29567513 ctactttctgtg 29567524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 268
Target Start/End: Complemental strand, 29250044 - 29249916
Alignment:
Q  138 aagggaaagtctacttattacattctactacattatttatgcagatatattctgatataaccaattacacgattgtgcaggtgtgaatagatattattct 237  Q
    |||||||||||||||| |||||||||||| ||||||||| |||| | |  ||||||||||||||||||| ||||| | |||| ||||||||||||| |||    
T  29250044 aagggaaagtctacttgttacattctactgcattatttaggcaggtgt--tctgatataaccaattacatgattgagtaggtctgaatagatattactct 29249947  T
Q  238 gcgatatgcaatttagtacaaaatgttacca 268  Q
    | |||| ||||||||||||||||||||||||    
T  29249946 gtgatacgcaatttagtacaaaatgttacca 29249916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 29426294 - 29426250
Alignment:
Q  268 agtactgcagcgtatccgaatttgaacaaaccactactttctgtg 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29426294 agtactgcagcgtatccgaatttgaacaaaccactactttctgtg 29426250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 29169278 - 29169206
Alignment:
Q  33 cttacctagattcggtaaat-aaaaaccaaaggaaaaatgcagtggagagaagcacactacacagttgatcaa 104  Q
    ||||||||||||| |||||| ||||||||| ||||||||||| || || ||||||||  ||||||||||||||    
T  29169278 cttacctagattcagtaaatgaaaaaccaatggaaaaatgcactgaagggaagcacaacacacagttgatcaa 29169206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 29250127 - 29250082
Alignment:
Q  44 tcggtaaat-aaaaaccaaaggaaaaatgcagtggagagaagcaca 88  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||    
T  29250127 tcggtaaattaaaaaccaaaagaaaaatgcagtggagggaagcaca 29250082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 18987267 - 18987002
Alignment:
Q  3 acaaaatgcttgaaaggaagagtatttattcttacctagattcggtaaat-aaaaaccaaaggaaaaatgcagtggagagaagcacactacacagttgat 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||   ||||||||||    
T  18987267 acaaaattcttgaaaggaagagtatttattcttacctagattcggtaaattaaaaaccaaaggaaaaatgcagtggaaggaagcacaacccacagttgat 18987168  T
Q  102 caa-tcatctttttacttcagatatgtatatattgataagggaaagtctacttattacattctactacattatttatgcagatatattctgatataacca 200  Q
    ||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  18987167 caaataatttttttacttcagatatgtatatgttgataagggaaagtctacttattacattctactgcattatttatgcag--atattctgatataacca 18987070  T
Q  201 attacacgattgtgcaggtgtgaatagatattattctgcgatatgcaatttagtacaaaatgttacca 268  Q
    |||||||||||||||||| ||||||||||| |||||||| |||  | |||||||||||||||| ||||    
T  18987069 attacacgattgtgcaggcgtgaatagatactattctgcaatacacgatttagtacaaaatgtcacca 18987002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 27520486 - 27520633
Alignment:
Q  3 acaaaatgcttgaaaggaagagtatttattcttacctagattcggtaaat-aaaaaccaaaggaaaaatgcagtggagagaagcacactacacagttgat 101  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  27520486 acaaaattcttgaaaagaagagtgtttattcttacctagattcggtaaattaaaaaccaaaggaaaaatgcagtggagggaagcacatcacacagttgat 27520585  T
Q  102 c-aatcatctttttacttcagatatgtatatattgataagggaaagtc 148  Q
    | ||| || |||||||||||||||||||||| | ||||||||||||||    
T  27520586 caaataatttttttacttcagatatgtatatgtcgataagggaaagtc 27520633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 27471561 - 27471463
Alignment:
Q  3 acaaaatgcttgaaaggaagagtatttattcttacctagattcggtaaa-taaaaaccaaaggaaaaatgcagtggagagaagcacactacacagttga 100  Q
    ||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||    
T  27471561 acaaaattcatgaaaggaagagtatttattcttacctagattcagtaaattaaaaaccaaacgaaaaatgcagtggagggaagcacaccacacagttga 27471463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 18986982 - 18986949
Alignment:
Q  275 cagcgtatccgaatttgaacaaaccactactttc 308  Q
    |||| |||||||||||||||||||||||||||||    
T  18986982 cagcatatccgaatttgaacaaaccactactttc 18986949  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 43712736 - 43712785
Alignment:
Q  184 atattctgatataaccaattacacgattgtgcaggtgtgaatagatatta 233  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  43712736 atattctgatataatcaattacacgattgtgcaggtgtaaatagatatta 43712785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 25519677 - 25519603
Alignment:
Q  152 ttattacattctactacattatttatgcagatatattctgatataaccaattacacgattgtgcaggtgtgaataga 228  Q
    |||||||| ||||||||||||||| |||||  | |||||||||||||| | ||||  |||||||| |||||| ||||    
T  25519677 ttattacaatctactacattatttgtgcag--agattctgatataacctactacaaaattgtgcatgtgtgagtaga 25519603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 10608646 - 10608577
Alignment:
Q  166 tacattatttatgcagatatattctgatataaccaattacacgattgtgc--aggtgtgaatagatattatt 235  Q
    ||||||||||||||||||||  || ||||||||||| ||||| |||||||  | |||||| |||||||||||    
T  10608646 tacattatttatgcagatat--tcagatataaccaactacacaattgtgcatatgtgtgagtagatattatt 10608577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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