View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5708_low_1 (Length: 717)
Name: NF5708_low_1
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 10 - 640
Target Start/End: Original strand, 42738340 - 42738974
Alignment:
| Q |
10 |
attatactatgacataaaaataataatagcatgcctaaaatatattgcaatgttaataatggtatgatgatagaagagataataaggctttaccctccac |
109 |
Q |
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| T |
42738340 |
attatactatgacataaaaataataatagcatgcctaaaatatattgcaatgttaataatggtatgatgatagaagagataataaggctttaccctccac |
42738439 |
T |
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| Q |
110 |
cactccaagggtctcttaaaccattgaaaaatatgatgtttcccacagatcttttgagaactatttcaatattctgcagataacatataatacatcaatg |
209 |
Q |
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| T |
42738440 |
cactccaagggtctcttaaaccattgaaaaatatgatgtttcccacagatcttttgagaactatttcaatattctgcagataacatataatacatcaatg |
42738539 |
T |
|
| Q |
210 |
catggaatcagcacgaacttggcaatatatgcaaaatgtaagtttatactatatcaaaccaaattaaaaatctaatgataatatatagtaat----tata |
305 |
Q |
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| T |
42738540 |
catggaatcagcacgaacttggcaatatatgcaaaatgtaagtttatactatatcaaaccaaattaaaaatcaaatgataatatatagtaattatatata |
42738639 |
T |
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| Q |
306 |
actcacatgaccaccaaattctgatgtaatccagttgggtcttggtactacgttgtagtcaaatttgcagtatgcatttctgtctatgactgaccactta |
405 |
Q |
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| T |
42738640 |
actcacatggccaccaaattctgatgtaatccagttgggtcttggtactacgttgtaggcaaatttgcagtatgcatttctgtctttgactgaccactta |
42738739 |
T |
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| Q |
406 |
gcttccgggaaaatgctttccttcttgcttgctctttatggaattatcatctcactacagtcctgtatgtgcaaagtattttttgaatttcattattata |
505 |
Q |
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| T |
42738740 |
gattccgggaaaatgctttccttactgcttgcaccttcgggcattatcatctcactacaggcctgtatgtgcaaagtattttttgaatttcattattata |
42738839 |
T |
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| Q |
506 |
ccactactaatataatgctttcttcattgtagcagacaaatattgcaaatgagacaattaaaatggaaaattccttcgctaattgaaatatttaggacca |
605 |
Q |
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| T |
42738840 |
ccactactaatataatgctttcttcattgtagcagacaaatattgcaaatgagacaattaaaatggaaaattccttcgctaattgaaatatttaggacca |
42738939 |
T |
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| Q |
606 |
ccgattggtagtaacccaagaagactttcaaaaga |
640 |
Q |
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| T |
42738940 |
ccgattggtagtaacccaagaagactttcaaaaga |
42738974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 629 - 700
Target Start/End: Original strand, 42739026 - 42739097
Alignment:
| Q |
629 |
actttcaaaagatgccatgtttgtctattttctttcctttaaattattttcatagtagagaagtgaggaggt |
700 |
Q |
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| T |
42739026 |
actttcaaaagatgccatgtttgtctattttctttcctttagattattttcatagtagagaagtgaggaggt |
42739097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 42745962 - 42746033
Alignment:
| Q |
100 |
taccctccaccactccaagggtctcttaaaccattgaaaaatatgatgtttcccacagatcttttgagaact |
171 |
Q |
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| T |
42745962 |
taccctccaccactccaagggtctcttaaaccattgaagaagataatgttgctcccatatcttttcagaact |
42746033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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