View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5708_low_10 (Length: 295)
Name: NF5708_low_10
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 26713690 - 26713549
Alignment:
| Q |
76 |
taactaccgcaataataagtgtgaaaattttaagaaagagcaatacctataaacccgtgtgggggaaccctcgccgccgctggctgacgttgattccatg |
175 |
Q |
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| T |
26713690 |
taactaccgcaataataagtgtgaaaattttaagacagagcaagacctataaacccgtgtgggggaaccctcgccgccgctggctgacgttgattccatg |
26713591 |
T |
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| Q |
176 |
gcaggctgccacgccactccgtcgcttcaatgtaacaatatt |
217 |
Q |
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| T |
26713590 |
gcaggctgccactccactccgtcgcttcaatgtaacaatatt |
26713549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 26983429 - 26983288
Alignment:
| Q |
76 |
taactaccgcaataataagtgtgaaaattttaagaaagagcaatacctataaacccgtgtgggggaaccctcgccgccgctggctgacgttgattccatg |
175 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26983429 |
taactaccgcaataataagtgtgaaaattttaagacagagcaagacctataaacccgtgtgggggaaccctcgccgccgctggctgacgttgattccatg |
26983330 |
T |
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| Q |
176 |
gcaggctgccacgccactccgtcgcttcaatgtaacaatatt |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26983329 |
gcaggctgccactccactccgtcgcttcaatgtaacaatatt |
26983288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 26711455 - 26711401
Alignment:
| Q |
225 |
tttaggttatttgattgatagagggcaacaatttgttgtattgttgagttattaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26711455 |
tttaggttatttgattgatagagggcaacaatttgttgtatttttgagttattaa |
26711401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 26981192 - 26981138
Alignment:
| Q |
225 |
tttaggttatttgattgatagagggcaacaatttgttgtattgttgagttattaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26981192 |
tttaggttatttgattgatagagggcaacaatttgttgtatttttgagttattaa |
26981138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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