View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5708_low_5 (Length: 387)
Name: NF5708_low_5
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 224 - 369
Target Start/End: Original strand, 3702474 - 3702619
Alignment:
| Q |
224 |
tgatgaacttgtagaggaagtgattgtaccatttggaccaccaagaagtttggtcccataaaagctagaattagagtttatagagccaagctaagaaacc |
323 |
Q |
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| T |
3702474 |
tgatgaacttgtagaggaagtgattgtaccatttggaccaccacgaaggttggtcccataaaagctagaattagagtttatagagccaagctaagaaacc |
3702573 |
T |
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| Q |
324 |
aagatagcccatgattttaaacactcaaaaaatgaacataacataa |
369 |
Q |
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| T |
3702574 |
aagatagcccatgattttaaacactcgaaaaatgaacataacataa |
3702619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 3702206 - 3702317
Alignment:
| Q |
11 |
cacagaagagaaatcaaaactttccaaggagagtaatgatatttaatatttgttggaaaaataatacaaaatagcccttttgattatataaatatcaaac |
110 |
Q |
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| T |
3702206 |
cacagaagagaaatcaaaactttccaaggagagtaatgatatttaatatttgttggaaaaataatacaaaatagcccttttgattatataaatatcaaac |
3702305 |
T |
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| Q |
111 |
cttcagaattca |
122 |
Q |
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|||||||||||| |
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| T |
3702306 |
cttcagaattca |
3702317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 3702367 - 3702446
Alignment:
| Q |
116 |
gaattcaaaacacagtcaaataccaaaaatctaacaatataatgagtttacacagaaacttatgaaccattaacctcaat |
195 |
Q |
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| T |
3702367 |
gaattcaaaacacaatcaaataccaaaaatctaacaatataatgagtttacacagaaacttatgaaccattaacctcaat |
3702446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 227 - 369
Target Start/End: Complemental strand, 6601069 - 6600928
Alignment:
| Q |
227 |
tgaacttgtagaggaagtgattgtaccatttggaccaccaagaagtttggtcccataaaagctagaattagagtttatagagccaagctaagaaaccaag |
326 |
Q |
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| T |
6601069 |
tgaacttgcagaggaagggattgtaccatttggaccaccaagaaggttggtcccataaaagctagaattagagtttatagagccaagctaagaaaccaag |
6600970 |
T |
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| Q |
327 |
atagcccatgattttaaacactcaaaaaatgaacataacataa |
369 |
Q |
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| T |
6600969 |
atagcccatgattttaaaca-gcaaaatatgaacataacataa |
6600928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 6601337 - 6601226
Alignment:
| Q |
11 |
cacagaagagaaatcaaaactttccaaggagagtaatgatatttaatatttgttggaaaaataatacaaaatagcccttttgattatataaatatcaaac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6601337 |
cacagaagagaaatcaaaactttccaaggagagtaatgatatttaatacttgtgtgaaaaataatacaaaatagcccttttgattatataaatattaaac |
6601238 |
T |
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| Q |
111 |
cttcagaattca |
122 |
Q |
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|||||||||||| |
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| T |
6601237 |
cttcagaattca |
6601226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 6601176 - 6601097
Alignment:
| Q |
116 |
gaattcaaaacacagtcaaataccaaaaatctaacaatataatgagtttacacagaaacttatgaaccattaacctcaat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
6601176 |
gaattcaaaacacagtcaaataccaaaaatctaacaatataatgagtttacacagaaacttatgatccactaacctcaat |
6601097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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