View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5708_low_6 (Length: 369)
Name: NF5708_low_6
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 105 - 354
Target Start/End: Complemental strand, 33429315 - 33429066
Alignment:
| Q |
105 |
ttccattttggctttgctacaattttggccagccctagactgcaccatttggctggctctctcttattttgagttgatttgatccctgggtaagctgaca |
204 |
Q |
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| T |
33429315 |
ttccatattggctttgctccaattttggtcagccctagactacaccagttggctggctctctcttgttttgagttgatttgatccctcggtaagctaaca |
33429216 |
T |
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| Q |
205 |
caaaaggttttattgtctgtctacatattgtttggagaatatggataaaaataaatggaagatattaatgatagggctagcaccatgcacaatatcataa |
304 |
Q |
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| T |
33429215 |
caaaaggttttattgtctgtctacatattgtttggagaatatggataaaaataaatggaagatattaatgatagggctagcaccatgcacaatatcatca |
33429116 |
T |
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| Q |
305 |
atacagtaatagctaaagttaggtgcaacttcaatattcggaatgcatct |
354 |
Q |
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| T |
33429115 |
atacagtaatagctgaagttaggtgcagctttaatattcggaatgcatct |
33429066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 33429395 - 33429354
Alignment:
| Q |
10 |
atataagaaatgaaaaatagttaatgaaaaattcattcaaaca |
52 |
Q |
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| T |
33429395 |
atataagaaatgaaaac-agttaatgaaaaattcattcaaaca |
33429354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 33429345 - 33429317
Alignment:
| Q |
49 |
aacactgaagtgcaaattttacattcttg |
77 |
Q |
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| T |
33429345 |
aacactgaagtgcaaattttacattcttg |
33429317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 42886104 - 42886064
Alignment:
| Q |
12 |
ataagaaatgaaaaatagttaatgaaaaattcattcaaaca |
52 |
Q |
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| T |
42886104 |
ataagaaattaaaaataatcaatgaaaaattcattcaaaca |
42886064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 27186803 - 27186763
Alignment:
| Q |
12 |
ataagaaatgaaaaatagttaatgaaaaattcattcaaaca |
52 |
Q |
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| T |
27186803 |
ataagaaattaaaaataatcaatgaaaaattcattcaaaca |
27186763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 16098296 - 16098336
Alignment:
| Q |
12 |
ataagaaatgaaaaatagttaatgaaaaattcattcaaaca |
52 |
Q |
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||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
16098296 |
ataagaaattaaaaataattaatgaaaaactcattcaaaca |
16098336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 17372568 - 17372528
Alignment:
| Q |
12 |
ataagaaatgaaaaatagttaatgaaaaattcattcaaaca |
52 |
Q |
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||||||||| ||||||| | ||||||||||||||||||||| |
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| T |
17372568 |
ataagaaattaaaaataatcaatgaaaaattcattcaaaca |
17372528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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