View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5708_low_9 (Length: 304)
Name: NF5708_low_9
Description: NF5708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5708_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 13968819 - 13969001
Alignment:
| Q |
16 |
aatattacatttacattcataattcgaagaaaatgagcgttatttcgcgtaacatttggcctgtttgcggtagtttatgttgtttttgtcctgcattgcg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13968819 |
aatattacatttacattcataattcgaagaaaatgagcgttatttcgcgtaacatttggcctgtttgcggtagtttatgttgtttttgtcctgcattgcg |
13968918 |
T |
|
| Q |
116 |
ggaaagatcaagacatcctattaaacgttacaagaaattgcttgctgatatcttccctcgcacgccggtagaatcataataac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13968919 |
ggaaagatcaagacatcctattaaacgttacaagaaattgcttgctgatatcttccctcgcacgccggtagaataataataac |
13969001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University