View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5709-Insertion-2 (Length: 1085)

Name: NF5709-Insertion-2
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5709-Insertion-2
NF5709-Insertion-2
[»] chr2 (9 HSPs)
chr2 (7-980)||(26410748-26411726)
chr2 (668-725)||(13527320-13527377)
chr2 (671-735)||(34807371-34807435)
chr2 (668-740)||(4056583-4056655)
chr2 (668-735)||(13350677-13350744)
chr2 (671-714)||(24020577-24020620)
chr2 (668-763)||(38843490-38843584)
chr2 (668-725)||(2265554-2265611)
chr2 (668-725)||(17263161-17263218)
[»] chr5 (9 HSPs)
chr5 (668-735)||(11100028-11100095)
chr5 (676-759)||(5522082-5522165)
chr5 (668-735)||(6350215-6350282)
chr5 (670-725)||(31408761-31408816)
chr5 (539-597)||(8679174-8679232)
chr5 (671-725)||(16475376-16475430)
chr5 (671-723)||(13947529-13947581)
chr5 (668-735)||(22653378-22653445)
chr5 (668-725)||(12713988-12714045)
[»] chr4 (23 HSPs)
chr4 (668-735)||(4464844-4464911)
chr4 (680-760)||(15015277-15015357)
chr4 (668-735)||(17716363-17716430)
chr4 (506-588)||(52831389-52831472)
chr4 (671-724)||(21633217-21633270)
chr4 (670-735)||(22431478-22431543)
chr4 (668-725)||(25198719-25198776)
chr4 (683-740)||(30622743-30622799)
chr4 (681-762)||(50503200-50503281)
chr4 (668-740)||(30365470-30365542)
chr4 (671-723)||(36197525-36197577)
chr4 (668-735)||(4390876-4390943)
chr4 (668-735)||(11051041-11051108)
chr4 (672-735)||(20148172-20148235)
chr4 (668-731)||(31435683-31435746)
chr4 (680-731)||(44433223-44433274)
chr4 (671-725)||(37970991-37971045)
chr4 (668-730)||(52714186-52714248)
chr4 (668-725)||(7707074-7707131)
chr4 (668-725)||(28307873-28307930)
chr4 (670-735)||(29061008-29061073)
chr4 (668-725)||(45780173-45780230)
chr4 (668-725)||(46895948-46896005)
[»] chr1 (19 HSPs)
chr1 (668-759)||(3391744-3391835)
chr1 (668-725)||(26844430-26844487)
chr1 (668-756)||(26063474-26063562)
chr1 (668-735)||(34319230-34319297)
chr1 (668-735)||(49239381-49239448)
chr1 (668-781)||(28867854-28867967)
chr1 (683-740)||(38596765-38596822)
chr1 (668-712)||(15732576-15732620)
chr1 (668-731)||(13120988-13121051)
chr1 (668-731)||(33525205-33525268)
chr1 (671-725)||(34320083-34320137)
chr1 (668-725)||(1507130-1507187)
chr1 (668-725)||(2022718-2022775)
chr1 (668-725)||(17047412-17047469)
chr1 (668-725)||(17499275-17499332)
chr1 (668-725)||(25602640-25602697)
chr1 (668-725)||(27658727-27658784)
chr1 (668-725)||(33561306-33561363)
chr1 (668-725)||(39827273-39827330)
[»] chr6 (5 HSPs)
chr6 (668-762)||(5300962-5301056)
chr6 (676-759)||(3107269-3107352)
chr6 (671-724)||(22756932-22756985)
chr6 (668-725)||(559017-559074)
chr6 (670-735)||(34440378-34440443)
[»] chr8 (7 HSPs)
chr8 (670-723)||(18531692-18531745)
chr8 (668-722)||(31523170-31523224)
chr8 (668-735)||(2731272-2731339)
chr8 (668-706)||(14172376-14172414)
chr8 (692-758)||(40046269-40046335)
chr8 (686-735)||(37296071-37296120)
chr8 (668-725)||(44826803-44826860)
[»] scaffold0041 (1 HSPs)
scaffold0041 (668-735)||(72149-72216)
[»] scaffold0016 (1 HSPs)
scaffold0016 (672-735)||(84969-85032)
[»] chr7 (7 HSPs)
chr7 (668-735)||(40894068-40894135)
chr7 (668-731)||(17845243-17845306)
chr7 (668-735)||(23030516-23030583)
chr7 (668-735)||(35001572-35001639)
chr7 (668-725)||(9488074-9488131)
chr7 (670-763)||(24171492-24171585)
chr7 (668-725)||(31511959-31512016)
[»] chr3 (8 HSPs)
chr3 (668-739)||(2812667-2812738)
chr3 (668-735)||(32025642-32025709)
chr3 (668-725)||(44748245-44748302)
chr3 (668-735)||(20451127-20451194)
chr3 (668-735)||(42218297-42218364)
chr3 (670-740)||(52594729-52594799)
chr3 (668-725)||(35500285-35500342)
chr3 (668-725)||(44846300-44846357)
[»] scaffold0173 (1 HSPs)
scaffold0173 (668-723)||(22301-22356)
[»] scaffold0031 (1 HSPs)
scaffold0031 (670-725)||(129596-129651)


Alignment Details
Target: chr2 (Bit Score: 835; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 7 - 980
Target Start/End: Original strand, 26410748 - 26411726
Alignment:
Q  7 actatccagtgaaggatttgttaagaactattgaagctatgagtatgaataagttgaatgtgtttcattggcatgtaactgattctcattcttttccttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26410748 actatccagtgaaggatttgttaagaactattgaagctatgagtatgaataagttgaatgtgtttcattggcatgtaactgattctcattcttttccttt 26410847  T
Q  107 gattcttccttctgaaccaatgttggctgagaaaggtgcgtatgatgttaatatggtttatactgttgatgatgttaaaagggttgttgaatttgggctt 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26410848 gattcttccttctgaaccaatgttggctgagaaaggtgcttatgatgttgatatggtttatactgttgatgatgttaaaagggttgttgaatttgggctt 26410947  T
Q  207 gatcgtggtgttcgtgttatgcctgagattgatgctcctggttagttctgttttttgtctttaatttattgatttactttactaaattgtgtgattgtgt 306  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26410948 gatcgtggtgttcgtgttatccctgagatcgatgctcctggttagttctgttttttgtctttaatttattgatttactttactaaattgtgtgattgtgt 26411047  T
Q  307 gattagagagtgatgaaaggatgttttgaaaaaagtgctttcggtgagaagaatattttagttttactatctcaatcttatattatatgttttgttttga 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26411048 gattagagagtgatgaaaggatgttttgaaaaaagtgctttcggtgagaagaatattttagttttactatctcaatcttatattatatgttttgttttga 26411147  T
Q  407 ttaattgtttatcttgatagttagtgccttaaaatatccatagaacaatagttacatttaaggctatgtttggcaatacaataaaaacaggcttatagat 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26411148 ttaattgtttatcttgatagttagtgccttaaaatatccatagaacaatagttacatttaaggctatgtttggcaatacaataaaaactggcttatagat 26411247  T
Q  507 tatagtttatagcttctaagctcacatgattcaaaaaacctgtttggtaactgacattttattacgagcttatagcttatttcactagcttaaggattat 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26411248 tatagtttatagcttctaagctcacatgattcaaaaaacctgtttggtaactgacattttattacgagcttatagcttatttcactagcttaaggattat 26411347  T
Q  607 tctccagacacaatttcaaacagggattgagcttataacatattattatttatc-nnnnnnnacatttattagttagttgaactggtaattttaccaaac 705  Q
    ||||||||||| |||||||| || | ||||||||||||||||||||||||||||        ||||||||||||||||||||| ||||||||||||||||    
T  26411348 tctccagacactatttcaaatagcgtttgagcttataacatattattatttatcttttttttacatttattagttagttgaaccggtaattttaccaaac 26411447  T
Q  706 acttcaattgacttatcagccataagtcattagtctccggctataagctatcagctattttttccgaacaaagccttatatttgataagttaccttaaaa 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  26411448 acttcaattgacttatcagccataagtcattagtctccggctataagctatcagctattttttccaaacaaagccttacatttgataagttagcttaaaa 26411547  T
Q  806 tatctttcgagcagtaatattcattaatagtctgggaaaagtattctttcgaggaatggtatgttgagaataatctgatttactgcaaaataaaaattat 905  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26411548 tatctttcgagcagtaatattcattaatagtctgagaaaagtattcttttgaggaatggtatgttgagaataatctgatttactgcaaaattaaaattat 26411647  T
Q  906 gagggagaagtactcttttcaagaaa--gttagaatatgtc-atggtttgat-aggattcagctcaa--tgtacaacaact 980  Q
    ||||  ||||||||||||||||||||   |||||||||||| |||||||||| ||||||||||||||  ||||||||||||    
T  26411648 gagg--gaagtactcttttcaagaaaagtttagaatatgtcaatggtttgataaggattcagctcaaattgtacaacaact 26411726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 13527377 - 13527320
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||||  |||||||||    
T  13527377 acatttattagctagttgaactgctatttttaccaaacacttcaattagcttatcagc 13527320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 671 - 735
Target Start/End: Original strand, 34807371 - 34807435
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||||||||||||| | |||||||||||||||||| ||||  ||||||||| || ||||||    
T  34807371 tttattagttagttgaaccgttaattttaccaaacactttaattagcttatcagctatcagtcat 34807435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 668 - 740
Target Start/End: Original strand, 4056583 - 4056655
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtc 740  Q
    |||||||| ||| |||||||| | |||||||||||||||||| ||||  |||||||||  |||||||| ||||    
T  4056583 acatttatcagtcagttgaaccgttaattttaccaaacactttaattagcttatcagctgtaagtcatcagtc 4056655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 13350744 - 13350677
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    ||||||||||| ||||||||| | || ||||||||||||||||| ||  ||||||||| || ||||||    
T  13350744 acatttattagctagttgaaccgttatttttaccaaacacttcagttagcttatcagctatcagtcat 13350677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 714
Target Start/End: Original strand, 24020577 - 24020620
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaatt 714  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  24020577 tttattagttagttgaaccgctaattttaccaaacactttaatt 24020620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 763
Target Start/End: Original strand, 38843490 - 38843584
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcagctat 763  Q
    |||||||| || ||||||||| | ||||||||||||||||||| |||  ||||| ||| || |||||||| ||  | |||||||||||||| ||||    
T  38843490 acatttatcagctagttgaaccgctaattttaccaaacacttc-attagcttataagctatcagtcattaatcatcagctataagctatcaactat 38843584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 2265611 - 2265554
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||||||  |||||||||    
T  2265611 acatttatcagctagttgaaccgctatttttaccaaacacttcaattagcttatcagc 2265554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 17263218 - 17263161
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||| || ||||||||||    
T  17263218 acatttatcagctagttgaaccgctatttttaccaaacacttcagttaacttatcagc 17263161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 11100095 - 11100028
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||  ||||||||| |||||||||    
T  11100095 acatttatcagttagttgaaccgctaattttaccaaacacttcaattagcttatcagctataagtcat 11100028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 676 - 759
Target Start/End: Original strand, 5522082 - 5522165
Alignment:
Q  676 tagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcag 759  Q
    ||||||||||| | | ||||||||||||||||||||||| |||||||| | || |||||| ||||  | ||||||| |||||||    
T  5522082 tagttagttgagccgctaattttaccaaacacttcaattaacttatcaactatcagtcatcagtcatcagctataaactatcag 5522165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 6350215 - 6350282
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| || ||||||||| | |||||||||||||||||| ||||  ||||||||| |||||||||    
T  6350215 acatttatcagctagttgaaccgctaattttaccaaacactttaattagcttatcagctataagtcat 6350282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 670 - 725
Target Start/End: Original strand, 31408761 - 31408816
Alignment:
Q  670 atttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||  |||||||||    
T  31408761 atttattagttagttgaaccgttaattttaccaaatacttcaattagcttatcagc 31408816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 539 - 597
Target Start/End: Complemental strand, 8679232 - 8679174
Alignment:
Q  539 aaaaaacctgtttggtaactgacattttattacgagcttatagcttatttcactagctt 597  Q
    ||||||| |||||||||| || | |||||| ||||||||||||||||||||| ||||||    
T  8679232 aaaaaacttgtttggtaattgtctttttatcacgagcttatagcttatttcagtagctt 8679174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 671 - 725
Target Start/End: Original strand, 16475376 - 16475430
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||||||||||||| | |||||||||||||||||| ||||  |||||||||    
T  16475376 tttattagttagttgaaccgctaattttaccaaacactttaattagcttatcagc 16475430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 671 - 723
Target Start/End: Complemental strand, 13947581 - 13947529
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaattgacttatca 723  Q
    ||||||| |||||||||| | |||||||| |||||||||||||| ||||||||    
T  13947581 tttattaattagttgaaccgttaattttatcaaacacttcaattaacttatca 13947529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 22653378 - 22653445
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| || ||||||||| | ||||||||||||||||||||| |  ||||||| | |||||||||    
T  22653378 acatttatcagctagttgaaccgctaattttaccaaacacttcaactagcttatcaactataagtcat 22653445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 12713988 - 12714045
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||| || ||||||||||    
T  12713988 acatttatcagctagttgaaccgctatttttaccaaacacttcagttaacttatcagc 12714045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 4464911 - 4464844
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| |||||||||||| | |||||||||| ||||||||||||  ||||||||| |||||||||    
T  4464911 acatttatcagttagttgaaccgttaattttaccgaacacttcaattagcttatcagctataagtcat 4464844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 15015277 - 15015357
Alignment:
Q  680 tagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcagc 760  Q
    ||||||||| | |||||||||||||||||||||||  ||||||||| |  |||||| |||| ||  |||||||||||||||    
T  15015277 tagttgaaccgctaattttaccaaacacttcaattagcttatcagctactagtcatcagtcaccacctataagctatcagc 15015357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 17716363 - 17716430
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| ||||||||||||   ||||||||||||||||||||| |  ||||||||| |||||||||    
T  17716363 acatttataagttagttgaaccactaattttaccaaacacttcaactagcttatcagctataagtcat 17716430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 506 - 588
Target Start/End: Original strand, 52831389 - 52831472
Alignment:
Q  506 ttatagtttatagcttctaagctcacatgatt-caaaaaacctgtttggtaactgacattttattacgagcttatagcttattt 588  Q
    |||||||||||||||| |||||||| ||||||  ||||||| ||||||||||| | ||||||   |||||||| ||||||||||    
T  52831389 ttatagtttatagcttataagctcatatgattaaaaaaaacttgtttggtaacggtcatttttacacgagcttgtagcttattt 52831472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 671 - 724
Target Start/End: Complemental strand, 21633270 - 21633217
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaattgacttatcag 724  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||  ||||||||    
T  21633270 tttattacttagttgaactgctaattttaccaaacactttaattagcttatcag 21633217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 670 - 735
Target Start/End: Original strand, 22431478 - 22431543
Alignment:
Q  670 atttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||| ||||||||||||   ||||||||||||||||||||| |  ||||||||| |||||||||    
T  22431478 atttataagttagttgaaccactaattttaccaaacacttcaactagcttatcagctataagtcat 22431543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 25198776 - 25198719
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| |||||||||||||| || ||||||||||||||||| ||  |||||||||    
T  25198776 acatttatcagttagttgaactgttatttttaccaaacacttcagttagcttatcagc 25198719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 683 - 740
Target Start/End: Complemental strand, 30622799 - 30622743
Alignment:
Q  683 ttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtc 740  Q
    |||||||| |||||||||||||||||||||| | ||||||||| ||||||||| ||||    
T  30622799 ttgaactgttaattttaccaaacacttcaatag-cttatcagctataagtcatcagtc 30622743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 681 - 762
Target Start/End: Original strand, 50503200 - 50503281
Alignment:
Q  681 agttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcagcta 762  Q
    |||||||| | |||||||||||||||||| |||| |||||||||| || ||| || || |  | ||||||||||||||||||    
T  50503200 agttgaaccgttaattttaccaaacacttaaattaacttatcagctatcagttatcagccatcagctataagctatcagcta 50503281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 668 - 740
Target Start/End: Complemental strand, 30365542 - 30365470
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtc 740  Q
    |||||||| ||| |||| ||| | ||||||||||||||| ||||| |  ||||||||| ||||||||||||||    
T  30365542 acatttataagtcagttaaaccgctaattttaccaaacatttcaactagcttatcagctataagtcattagtc 30365470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 671 - 723
Target Start/End: Original strand, 36197525 - 36197577
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaattgacttatca 723  Q
    |||||||||||||||||| | |||||||||||||||||| ||||  |||||||    
T  36197525 tttattagttagttgaaccgttaattttaccaaacactttaattagcttatca 36197577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 4390943 - 4390876
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| || ||||||||| | | |||||||||||||||||||||  ||||| ||| |||||||||    
T  4390943 acatttatcagctagttgaacagcttattttaccaaacacttcaattagcttataagctataagtcat 4390876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 11051041 - 11051108
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| ||| |||||||| | ||||||||||||||||||||| |   |||||||| |||||||||    
T  11051041 acatttataagtcagttgaaccgctaattttaccaaacacttcaactagtttatcagctataagtcat 11051108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 735
Target Start/End: Complemental strand, 20148235 - 20148172
Alignment:
Q  672 ttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||| ||||| |||||| | ||||||||||||||| |||||||  ||||||||| |||||||||    
T  20148235 ttataagttaattgaaccgataattttaccaaacagttcaattagcttatcagctataagtcat 20148172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 731
Target Start/End: Original strand, 31435683 - 31435746
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataag 731  Q
    |||||||| || ||||||||||| |||||||||||||| |||||| |  ||||||||| |||||    
T  31435683 acatttatcagctagttgaactgttaattttaccaaacgcttcaagtagcttatcagctataag 31435746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 731
Target Start/End: Original strand, 44433223 - 44433274
Alignment:
Q  680 tagttgaactggtaattttaccaaacacttcaattgacttatcagccataag 731  Q
    |||||||| || |||||||||||||||||||||||  ||||||||| |||||    
T  44433223 tagttgaattgctaattttaccaaacacttcaattagcttatcagctataag 44433274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 671 - 725
Target Start/End: Original strand, 37970991 - 37971045
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    ||||| |||||||||||| | |||||||||||||||||||| ||  |||||||||    
T  37970991 tttataagttagttgaaccgctaattttaccaaacacttcagttagcttatcagc 37971045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 730
Target Start/End: Original strand, 52714186 - 52714248
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataa 730  Q
    |||||||| || ||||||||| | || |||||||||||||||||| | |||||||||| ||||    
T  52714186 acatttatcagctagttgaaccgctagttttaccaaacacttcaactaacttatcagctataa 52714248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 7707074 - 7707131
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||||||  |||||||||    
T  7707074 acatttatcagctagttgaaccgctatttttaccaaacacttcaattagcttatcagc 7707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 28307873 - 28307930
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||| || ||||||||||    
T  28307873 acatttatcagctagttgaaccgctatttttaccaaacacttcagttaacttatcagc 28307930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 670 - 735
Target Start/End: Original strand, 29061008 - 29061073
Alignment:
Q  670 atttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||| ||||||||  || | ||||||||||||||||||||| |  ||||||||| |||||||||    
T  29061008 atttataagttagttataccgctaattttaccaaacacttcaactagcttatcagctataagtcat 29061073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 45780230 - 45780173
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| |||||||||||| | || ||||||||||||||||| ||  |||||||||    
T  45780230 acatttatcagttagttgaaccgctatttttaccaaacacttcagttagcttatcagc 45780173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 46895948 - 46896005
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    ||||||||||| ||||||||| | || ||||||||||||||||| ||  |||||||||    
T  46895948 acatttattagctagttgaaccgctatttttaccaaacacttcagttagcttatcagc 46896005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 668 - 759
Target Start/End: Original strand, 3391744 - 3391835
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcag 759  Q
    |||||||| || ||||||||| | |||||||||||||||||||||||  ||||| ||| || |||||||| ||  | |||||||||||||||    
T  3391744 acatttatcagctagttgaaccgctaattttaccaaacacttcaattagcttataagctatcagtcattaatcatcagctataagctatcag 3391835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 26844430 - 26844487
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| |||||||||||||| || ||||||||||||||||| || ||||||||||    
T  26844430 acatttatcagttagttgaactgctacttttaccaaacacttcagttaacttatcagc 26844487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 668 - 756
Target Start/End: Complemental strand, 26063562 - 26063474
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctat 756  Q
    |||||||| || ||||||||||| |||||||| ||||||||| |||| |||||| ||| || |||||| ||||  | ||||||||||||    
T  26063562 acatttatcagctagttgaactgttaattttatcaaacactttaattaacttataagctatcagtcatcagtcatcagctataagctat 26063474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 34319230 - 34319297
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| ||||||||||||   ||||||||||||||||||||| |  ||||||||| |||||||||    
T  34319230 acatttataagttagttgaaccactaattttaccaaacacttcaactagcttatcagctataagtcat 34319297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 49239448 - 49239381
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| ||| |||||||||| |||||||| |||||||||||| |  ||||||||| |||||||||    
T  49239448 acatttataagtcagttgaactgctaattttatcaaacacttcaactagcttatcagctataagtcat 49239381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 668 - 781
Target Start/End: Complemental strand, 28867967 - 28867854
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcagctattttt 767  Q
    |||||||| || || |||||| | || |||||||||||||||||| | |||||||||| |||||| || | ||  | ||||| ||||||| |||||||||    
T  28867967 acatttatcagctaattgaaccgctagttttaccaaacacttcaactaacttatcagctataagttatcaatcatcagctatcagctatccgctattttt 28867868  T
Q  768 tccgaacaaagcct 781  Q
     || |||| |||||    
T  28867867 accaaacagagcct 28867854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 683 - 740
Target Start/End: Original strand, 38596765 - 38596822
Alignment:
Q  683 ttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtc 740  Q
    |||||||| ||||||||||||||||||||| |  ||||||||| ||||||||| ||||    
T  38596765 ttgaactgctaattttaccaaacacttcaactagcttatcagctataagtcatcagtc 38596822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 668 - 712
Target Start/End: Original strand, 15732576 - 15732620
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaa 712  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||    
T  15732576 acatttatcagttagttgaactgttaattttaccaaacatttcaa 15732620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 731
Target Start/End: Complemental strand, 13121051 - 13120988
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataag 731  Q
    |||||||| || ||||||||||| || ||||||||||||||||| ||  ||||||||| |||||    
T  13121051 acatttatcagctagttgaactgctatttttaccaaacacttcagttagcttatcagctataag 13120988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 731
Target Start/End: Original strand, 33525205 - 33525268
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataag 731  Q
    |||||||| || ||||||||| | || ||||||||||||||||| || |||||||||| |||||    
T  33525205 acatttatcagctagttgaaccgctatttttaccaaacacttcagttaacttatcagctataag 33525268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 671 - 725
Target Start/End: Original strand, 34320083 - 34320137
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    ||||| || ||||||||||| |||||||||||||||||||| ||  |||||||||    
T  34320083 tttataagctagttgaactgctaattttaccaaacacttcagttagcttatcagc 34320137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 1507187 - 1507130
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||||||  |||||||||    
T  1507187 acatttatcagctagttgaaccgctatttttaccaaacacttcaattagcttatcagc 1507130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 2022775 - 2022718
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| ||||||||  || | |||||||||||||||||||||||  |||||||||    
T  2022775 acatttataagttagttctaccgctaattttaccaaacacttcaattagcttatcagc 2022718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 17047412 - 17047469
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||||||  |||||||||    
T  17047412 acatttatcagctagttgaaccgctatttttaccaaacacttcaattagcttatcagc 17047469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 17499332 - 17499275
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| |||||||||||| | || ||||||||||||||||| ||  |||||||||    
T  17499332 acatttatcagttagttgaaccgctatttttaccaaacacttcagttagcttatcagc 17499275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 25602640 - 25602697
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||||| || ||||||||||||||||| ||  |||||||||    
T  25602640 acatttatcagctagttgaactgctatttttaccaaacacttcagttagcttatcagc 25602697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 27658784 - 27658727
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| |||||||||||| | ||||||||||||||| || ||||  |||||||||    
T  27658784 acatttatcagttagttgaaccgttaattttaccaaacattttaattagcttatcagc 27658727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 33561363 - 33561306
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||| || ||||||||||    
T  33561363 acatttatcagctagttgaaccgctatttttaccaaacacttcagttaacttatcagc 33561306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 39827273 - 39827330
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||||| || ||||||||||||||||| ||  |||||||||    
T  39827273 acatttatcagctagttgaactgttatttttaccaaacacttcagttagcttatcagc 39827330  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 668 - 762
Target Start/End: Complemental strand, 5301056 - 5300962
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcagcta 762  Q
    |||||||| ||| |||||||| | ||||||||||||||||||||| | |||||||||| |||||  || ||||  | |||||||||||| |||||    
T  5301056 acatttataagtcagttgaaccgctaattttaccaaacacttcaactaacttatcagctataagctatcagtcatcagctataagctataagcta 5300962  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 676 - 759
Target Start/End: Complemental strand, 3107352 - 3107269
Alignment:
Q  676 tagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcag 759  Q
    ||||||||||| | | |||||||||||||||||||||||  ||||||||| || | |||| ||||  | |||||||||||||||    
T  3107352 tagttagttgagccgctaattttaccaaacacttcaattagcttatcagctatcaatcatcagtcatcagctataagctatcag 3107269  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 671 - 724
Target Start/End: Original strand, 22756932 - 22756985
Alignment:
Q  671 tttattagttagttgaactggtaattttaccaaacacttcaattgacttatcag 724  Q
    |||||||||||||||||| | |||||||||||||||||| ||||  ||||||||    
T  22756932 tttattagttagttgaaccgctaattttaccaaacactttaattagcttatcag 22756985  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 559017 - 559074
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||||||  |||||||||    
T  559017 acatttatcagctagttgaaccgctatttttaccaaacacttcaattagcttatcagc 559074  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 670 - 735
Target Start/End: Original strand, 34440378 - 34440443
Alignment:
Q  670 atttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||| ||| |||||||| | |||| |||||||||||||||| |  ||||||||| |||||||||    
T  34440378 atttataagtcagttgaaccgctaatattaccaaacacttcaactagcttatcagctataagtcat 34440443  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 670 - 723
Target Start/End: Complemental strand, 18531745 - 18531692
Alignment:
Q  670 atttattagttagttgaactggtaattttaccaaacacttcaattgacttatca 723  Q
    |||||| | |||||||||||| ||||||||||||||||||||||| ||||||||    
T  18531745 atttatcaattagttgaactgctaattttaccaaacacttcaattaacttatca 18531692  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 31523170 - 31523224
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatc 722  Q
    |||||||| || ||||||||| | ||||||||| |||||||||||||||||||||    
T  31523170 acatttatcagctagttgaaccgttaattttactaaacacttcaattgacttatc 31523224  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 2731339 - 2731272
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    ||||||||||||||||||||  | ||||||||  ||||| ||||||| |||||||||| || ||||||    
T  2731339 acatttattagttagttgaaacgctaattttataaaacagttcaattaacttatcagctattagtcat 2731272  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 706
Target Start/End: Original strand, 14172376 - 14172414
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaaca 706  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  14172376 acatttattagttaattgaactgctaattttaccaaaca 14172414  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 692 - 758
Target Start/End: Original strand, 40046269 - 40046335
Alignment:
Q  692 taattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatca 758  Q
    |||||||||||||||||||||||  ||||||||| || ||||||  |||  | ||||||||||||||    
T  40046269 taattttaccaaacacttcaattagcttatcagctattagtcatctgtcatcagctataagctatca 40046335  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 686 - 735
Target Start/End: Original strand, 37296071 - 37296120
Alignment:
Q  686 aactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| ||||||    
T  37296071 aactgttaattttaccaaacatttcaattaacttatcagtcattagtcat 37296120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 44826860 - 44826803
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||||||  |||||||||    
T  44826860 acatttatcagctagttgaaccgctatttttaccaaacacttcaattagcttatcagc 44826803  T

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Target: scaffold0041 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 72216 - 72149
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| ||||| |||||| | |||||||||||||||||||||||  ||||||||  |||||||||    
T  72216 acatttatcagttaattgaaccgttaattttaccaaacacttcaattagcttatcagttataagtcat 72149  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 672 - 735
Target Start/End: Original strand, 84969 - 85032
Alignment:
Q  672 ttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||| ||||| |||||| | |||||||||||||||||||||||  ||||||||| |||||||||    
T  84969 ttatcagttaattgaaccgctaattttaccaaacacttcaattagcttatcagctataagtcat 85032  T

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Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 40894068 - 40894135
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| ||||| |||||| | |||||||||||||||||||||||  ||||||||  |||||||||    
T  40894068 acatttatcagttaattgaaccgttaattttaccaaacacttcaattagcttatcagttataagtcat 40894135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 731
Target Start/End: Original strand, 17845243 - 17845306
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataag 731  Q
    |||||||| ||| |||||||| | |||||||||||||||||||||||  ||||| ||| |||||    
T  17845243 acatttataagtcagttgaaccgctaattttaccaaacacttcaattagcttataagctataag 17845306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 23030516 - 23030583
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| ||| |||||||| | ||||||||||||||||||||| |  ||||||||| |||| ||||    
T  23030516 acatttataagtcagttgaaccgttaattttaccaaacacttcaactagcttatcagctataaatcat 23030583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 35001572 - 35001639
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| |||||||||||| | |||||||| ||||||||| ||||  ||||||||| || ||||||    
T  35001572 acatttatcagttagttgaaccgctaattttaacaaacactttaattagcttatcagctattagtcat 35001639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 9488074 - 9488131
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||||||  |||||||||    
T  9488074 acatttatcagctagttgaaccgctatttttaccaaacacttcaattagcttatcagc 9488131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 670 - 763
Target Start/End: Original strand, 24171492 - 24171585
Alignment:
Q  670 atttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtctccggctataagctatcagctat 763  Q
    |||||| || |||||||||   |||||||||||||||||||||||  ||||||||| || ||| || || |  | |||||||||||| ||||||    
T  24171492 atttatcagctagttgaaccactaattttaccaaacacttcaattagcttatcagctatcagttatcagccatcagctataagctataagctat 24171585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 31511959 - 31512016
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    ||||||||||| ||||||||| | || ||||| ||||||||||| || ||||||||||    
T  31511959 acatttattagctagttgaaccgctatttttatcaaacacttcagttaacttatcagc 31512016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 739
Target Start/End: Complemental strand, 2812738 - 2812667
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagt 739  Q
    ||||||||||| ||||||||| | |||||||||||||||||| ||||  ||||||| | |||||||| ||||    
T  2812738 acatttattaggtagttgaaccgctaattttaccaaacactttaattatcttatcaactataagtcactagt 2812667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 32025709 - 32025642
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| ||||||||||||   ||||||||||||||||||||| |  ||||||||| |||||||||    
T  32025709 acatttataagttagttgaaccactaattttaccaaacacttcaactagcttatcagctataagtcat 32025642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 44748302 - 44748245
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| |||||| ||||| | || |||||||||||||||||||| ||||||||||    
T  44748302 acatttatcagttagatgaaccgctatttttaccaaacacttcaattaacttatcagc 44748245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 20451127 - 20451194
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| || ||||||||| | |||||||||||||||||| ||||  ||||||||| || ||||||    
T  20451127 acatttatcagctagttgaaccgctaattttaccaaacactttaattagcttatcagctatcagtcat 20451194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 42218297 - 42218364
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcat 735  Q
    |||||||| || ||||| ||| | ||||||||||||||||||||||| |||||| ||| || ||||||    
T  42218297 acatttatcagctagttcaaccgctaattttaccaaacacttcaattaacttataagctattagtcat 42218364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 670 - 740
Target Start/End: Complemental strand, 52594799 - 52594729
Alignment:
Q  670 atttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagccataagtcattagtc 740  Q
    |||||| ||| |||||||| | ||||||||||||||||||||| |  ||||||||| |||||  |||||||    
T  52594799 atttataagtcagttgaaccgttaattttaccaaacacttcaactagcttatcagctataagctattagtc 52594729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 35500285 - 35500342
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| || ||||||||| | || ||||||||||||||||||||  |||||||||    
T  35500285 acatttatcagctagttgaaccgctatttttaccaaacacttcaattagcttatcagc 35500342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 44846300 - 44846357
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||||| |||||||||||| | || ||||||||||||||||| ||  |||||||||    
T  44846300 acatttatcagttagttgaaccgctatttttaccaaacacttcagttagcttatcagc 44846357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 723
Target Start/End: Complemental strand, 22356 - 22301
Alignment:
Q  668 acatttattagttagttgaactggtaattttaccaaacacttcaattgacttatca 723  Q
    ||||||||||| ||||||||| | || ||||||||||||||||||||  |||||||    
T  22356 acatttattagctagttgaaccgttatttttaccaaacacttcaattagcttatca 22301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 725
Target Start/End: Complemental strand, 129651 - 129596
Alignment:
Q  670 atttattagttagttgaactggtaattttaccaaacacttcaattgacttatcagc 725  Q
    |||||| |||||||||||||| || ||||||||||||||||| ||  |||||||||    
T  129651 atttatcagttagttgaactgctatttttaccaaacacttcagttagcttatcagc 129596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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