View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709-Insertion-3 (Length: 1077)
Name: NF5709-Insertion-3
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 417 - 893
Target Start/End: Complemental strand, 45757385 - 45756907
Alignment:
| Q |
417 |
aaaggaagcctttggaaacattcgtaagttacaaggaaattgagtttgggaatcaatcactttccacgaaataaaatgtgaccgtataaatcttccacta |
516 |
Q |
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| T |
45757385 |
aaaggaagcctttggaaacattcgtaagttacaaggaaattgagtttgggaatcaatcactttccacgaaataaaatgcgaccgtataaatctcccacta |
45757286 |
T |
|
| Q |
517 |
tag------------taaggtaggaagcatcattctatgtgcatgtgcatgtgcatgcgcccaaaacataatggaaacatattatattatgcatgttaat |
604 |
Q |
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| T |
45757285 |
tagcttatattgatgtaaggtaggaagcatcattctatgtgcatgtgcatg------cgcccaaaacataatggaaacatattatattatgcatgttaa- |
45757193 |
T |
|
| Q |
605 |
taagatgttctatattcactagtagtaataatctactgtcaacaacttatcaaggtggtcaatacaacaatttgccgtataaaaatccattggaactcta |
704 |
Q |
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| T |
45757192 |
---gatgttctatattcactagtagtagtaatctactgtcaacaacttatcaaggtggtcaatacaacaatttgccgtataaaaatccattggaactcta |
45757096 |
T |
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| Q |
705 |
attagtggtatgttaccannnnnnnnaaaaaagcacgttacttgtagtagatacgaaagatctagaagaaaaaagaataagagtaataataagttaataa |
804 |
Q |
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| T |
45757095 |
attagtggtatgttaccatttttttt-aaaaagcacgttacttgtagtagatacgaaagatctagaagaaaaaagaataagagtaataataagttaataa |
45756997 |
T |
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| Q |
805 |
tgatcgcaaaatgcgaatatctaataaggtgaaatcttcatgtgagaagaaccagacattattgac-aaagtaccatcgaaaagaatatt |
893 |
Q |
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| T |
45756996 |
tggtggcaaaatgcgaatatctaataaggtgaaatcttaatgtgagaagaaccaaacattattgacaaaagtaccatcgaaaagaatatt |
45756907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 45757797 - 45757464
Alignment:
| Q |
8 |
catatagtacaacttagaaccgtgatattcaacacat--gaatccaacaacgcataagatgcactgaaattgagtatacggaaaacgtattttatacggt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
45757797 |
catatagtacaacttagaaccgtgatattcaacacatatgaatccaacaacgcataagatgcaccgaaattgagtgtacggaaaccgtattttatacggt |
45757698 |
T |
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| Q |
106 |
acatgtttttgtctgagaagcatttttctaaaatataaacgtgcgtttttattcattaaggcttaagcattgtattgttgtggttcagnnnnnnngtgtt |
205 |
Q |
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| T |
45757697 |
acatgtttttgtctgagaagcatttttctaaaatataaacgtgcgtttttattcattaaggcttaagcattgtattgttgtggttcagaaaaaaagtgtt |
45757598 |
T |
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| Q |
206 |
gcaccgaagtgaatgccagctcttggaatcctaacctatagtgtgagtttgtggtttctttaaggggcaaaaacataccgtacgttgtgcattttcgtat |
305 |
Q |
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| T |
45757597 |
gcaccgaagtgaatgccagctcttggaatcctaacctacagtgtgagtttgtggtttctttaaggggcaaaaaaataccgtacgttgtgcattttcgtat |
45757498 |
T |
|
| Q |
306 |
tcttaccaacccgagagtacttcaaatcttaaat |
339 |
Q |
| |
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| T |
45757497 |
tcttaccaactcgagagtacttcaaatcttaaat |
45757464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 889 - 946
Target Start/End: Complemental strand, 45756869 - 45756811
Alignment:
| Q |
889 |
atattcatagcaaatgttt-cccaaaatttaagtttgttagtaccattttgtcctttgt |
946 |
Q |
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| T |
45756869 |
atattcatagcaaatgttttcccaaaatttaagtttgttagtaccattttgtcctttgt |
45756811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 949 - 979
Target Start/End: Complemental strand, 45756774 - 45756744
Alignment:
| Q |
949 |
actcacatttgagctctttatgttaccacac |
979 |
Q |
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| T |
45756774 |
actcacatttgagctctttatgttaccacac |
45756744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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