View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5709-Insertion-4 (Length: 1035)

Name: NF5709-Insertion-4
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5709-Insertion-4
NF5709-Insertion-4
[»] chr4 (12 HSPs)
chr4 (7-1035)||(4332274-4333299)
chr4 (218-581)||(4356588-4356951)
chr4 (231-677)||(4323640-4324086)
chr4 (536-675)||(4350370-4350509)
chr4 (390-539)||(4129500-4129649)
chr4 (725-826)||(4128835-4128934)
chr4 (959-1021)||(4126705-4126766)
chr4 (975-1026)||(4323365-4323415)
chr4 (959-1026)||(4350904-4350970)
chr4 (967-1035)||(4135799-4135865)
chr4 (868-913)||(4330047-4330092)
chr4 (974-1035)||(4342630-4342689)
[»] chr6 (9 HSPs)
chr6 (229-577)||(5422053-5422401)
chr6 (231-379)||(5173995-5174143)
chr6 (231-343)||(5092790-5092902)
chr6 (231-343)||(5160638-5160750)
chr6 (229-452)||(5358165-5358388)
chr6 (231-300)||(5149885-5149954)
chr6 (231-379)||(5272862-5273010)
chr6 (229-310)||(5070590-5070671)
chr6 (504-581)||(5340679-5340756)
[»] chr8 (1 HSPs)
chr8 (716-755)||(45113485-45113524)
[»] chr7 (1 HSPs)
chr7 (229-300)||(34715183-34715254)


Alignment Details
Target: chr4 (Bit Score: 908; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 908; E-Value: 0
Query Start/End: Original strand, 7 - 1035
Target Start/End: Original strand, 4332274 - 4333299
Alignment:
Q  7 acaaaaatctcgctcagacaacttcacccatgtcttccccaacaagttccttttctgatgaagatttgtttaatattgattcacattcagacagttctga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332274 acaaaaatctcgctcagacaacttcacccatgtcttccccaacaagttccttttctgatgaagatttgtttaatattgattcacattcagacagttctga 4332373  T
Q  107 caccgaagaattgcacagtcctcagattccttttgaggacttggatcctgatatgaacatagacgttgatgacatgttcgctccaaaagatcggtttgat 206  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4332374 caccgaagaattgcacagtcctcaggttccttttgatgacttggatcctgatatgaacatagacgctgatgacatgttcgctccaaaagatcggtttgat 4332473  T
Q  207 attcatagtataagaaagtacaatgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctg 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4332474 attcatagtataagaaagtacgatgtgttcttgagttttagaggcgaagacactcgcgcatcattcacttcacatctctctacatctcttcaaagctctg 4332573  T
Q  307 gaattatcgttttcaaggacgatcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgagaatttctgttgttgt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332574 gaattatcgttttcaaggacgatcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgagaatttctgttgttgt 4332673  T
Q  407 cttctccaaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332674 cttctccaaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttc 4332773  T
Q  507 tacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatgg 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4332774 tacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcaaaatcttttgaacagagttttaaaagtggatgaattcatgg 4332873  T
Q  607 tgccaaagtggagagacgcgcttcgtaatgctgctggcattgcaggatttgttgttctaaattccaggttacttctctctctgcactttcatatgctttg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332874 tgccaaagtggagagacgcgcttcgtaatgctgctggcattgcaggatttgttgttctaaattccaggttacttctctctctgcactttcatatgctttg 4332973  T
Q  707 tcgattattttgtgcttttaaatcaatggttttattcaggatttctaatttgtgcattgctactagttcaaatgtaattcattacttaccgttctagtgt 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332974 tcgattattttgtgcttttaaatcaatggttttattcaggatttctaatttgtgcattgctactagttcaaatgtaattcattacttaccgttctagtgt 4333073  T
Q  807 ttttaacaaactttctaatctaatcaacacattcaaacgcaacttttgtaatgataatttattttactcaaatgtcccctctacttttgacacatacata 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4333074 ttttaacaaactttctaatctaatcaacacattcaaacgcaacttttgtaatgataatttattttactcaaatgtcccctctacttttgacacatacata 4333173  T
Q  907 cataggtatacatatatatatannnnnnnnnnnnnnnnnnnaaatgttccattttctttgttttttcataggaacgaaagtggaggtcatcaaggatatt 1006  Q
    ||||||||||||||||||| |                    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4333174 cataggtatacatatatatgtgtgtgtgtgtgtgtgtgtgtaaatgttcca-tttctttgttttttcataggaacgaaagt-gaggtcatcaaggatatt 4333271  T
Q  1007 gttgaaaatgttacacgttttgcttgaca 1035  Q
    |||||||||||| |||| |||||||||||    
T  4333272 gttgaaaatgttgcacg-tttgcttgaca 4333299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 218 - 581
Target Start/End: Original strand, 4356588 - 4356951
Alignment:
Q  218 aagaaagtacaatgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgtt 317  Q
    |||||||||| ||||||| ||||||||||||||  |||||||| | ||||||||||||||||| ||  ||   |||||||||| | | |||||||| ||     
T  4356588 aagaaagtacgatgtgtttttgagttttagaggagaagacactagagcatcattcacttcacatcttactttctctcttcaaaacgccggaattattgtc 4356687  T
Q  318 ttcaaggacgatcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgagaatttctgttgttgtcttctccaaaa 417  Q
    |||||||||||||| || ||| |||| ||| | | ||| || | | |  |||| ||||||||| |    || |||||| ||||| | |||||||||||||    
T  4356688 ttcaaggacgatcagtcgcttgaaagaggagagcacatatccacatcgttactccaagcaatcgaaatctctagaattgctgttatcgtcttctccaaaa 4356787  T
Q  418 actacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatgtaca 517  Q
    |||| |||||||||  ||||||||| | ||||||| | ||||| |||  |||||  || || | | | || ||||||||||| |||||||| |||||  |    
T  4356788 actatgctgattcgtcatggtgtctgcgagagttggttcaaataatgtcgtgttacagtactataggccaagtggtactgccagtgttctatgatgttga 4356887  T
Q  518 tccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacaga 581  Q
     || || ||||||||| ||||||| ||||||||||||||| | |||| ||||||||||||||||    
T  4356888 cccttccgaagttcgtcgtcaaaccggtgactttggtaaatcatttcaaaatcttttgaacaga 4356951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 231 - 677
Target Start/End: Complemental strand, 4324086 - 4323640
Alignment:
Q  231 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 330  Q
    ||||| ||||||||  ||||  ||||||||||||||||||||| |||||| ||| |  |||||||||| | | | |||||  || |||||||||| ||||    
T  4324086 gtgtttttgagtttccgaggagaagacactcgcgcatcattcatttcacatctcacatcatctcttcagaacgccggaatcctcattttcaaggatgatc 4323987  T
Q  331 attcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgagaatttctgttgttgtcttctccaaaaactacgctgattc 430  Q
    | || |||||||| ||| ||| ||| ||   | | ||| | || |||||  |    || | |||||||||| | |||||||| ||||||||||| |||||    
T  4323986 agtcgcttcaaagaggagatcacatatccccatcgctagttcacgcaattgaatcttctaaaatttctgttatagtcttctcaaaaaactacgccgattc 4323887  T
Q  431 gcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatgtacatccctcggaagtt 530  Q
      | ||||||||||||||||||  |||||| |||| | ||   ||||||||| | ||||| |||||||||||||||||||||||  |||| || ||||||    
T  4323886 caagtggtgtcttcaagagttgtggcaaataatggtgcgtcacagaaccacaggccaggttgtactgcctgtgttctacgatgtcgatccttctgaagtt 4323787  T
Q  531 cgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttc 630  Q
    |||  |||||| ||||| ||||||||| | |||| |||||| ||||||||| ||| | | | |||  |||  |||| |  | |||||||| | | |||||    
T  4323786 cgtcatcaaactggtgagtttggtaaatcatttctaaatctattgaacagaatttcacatgaggagaaatggatggcgttagagtggagaaatgagcttc 4323687  T
Q  631 gtaatgctgctggcattgcaggatttgttgttctaaattccaggtta 677  Q
    ||  ||| |||||| |||| ||||||||||| |||||||||||||||    
T  4323686 gtgttgcggctggccttgctggatttgttgtcctaaattccaggtta 4323640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 536 - 675
Target Start/End: Original strand, 4350370 - 4350509
Alignment:
Q  536 tcaaacaggtgactttggtaaagcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaat 635  Q
    |||||||||||| |||||| ||||||||| |||    ||||||| |||||||||||  |||||||||||||| ||||||||||||||||| |||||| ||    
T  4350370 tcaaacaggtgagtttggtgaagcttttcaaaaagcattgaacaaagttttaaaaggagatgaattcatggtaccaaagtggagagacgcacttcgtgat 4350469  T
Q  636 gctgctggcattgcaggatttgttgttctaaattccaggt 675  Q
    ||||||||| |||||||||||||||| || ||||||||||    
T  4350470 gctgctggccttgcaggatttgttgtcctgaattccaggt 4350509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 390 - 539
Target Start/End: Complemental strand, 4129649 - 4129500
Alignment:
Q  390 agaatttctgttgttgtcttctccaaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacagg 489  Q
    ||||||||| || |||| ||||||||||||||||| ||||| |  |||||| | || |||||||| |||||  |||||||||  ||||||||  ||||||    
T  4129649 agaatttctattattgtattctccaaaaactacgcggattcaccgtggtgtatgcaggagttgattcaaatactggagtgttacagaaccactggacagg 4129550  T
Q  490 tggtactgcctgtgttctacgatgtacatccctcggaagttcgtagtcaa 539  Q
    |||||||||||||||||||||||||  |||| || || |||||| |||||    
T  4129549 tggtactgcctgtgttctacgatgtttatccgtctgatgttcgtcgtcaa 4129500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 725 - 826
Target Start/End: Complemental strand, 4128934 - 4128835
Alignment:
Q  725 taaatcaatggttttattcaggatttctaatttgtgcattgctactagttcaaatgtaattcattacttaccgttctagtgtttttaacaaactttctaa 824  Q
    ||||||||| ||||||||| |||||| ||||  ||||||||||||||||||||||  |||| ||||  || ||| |||||||||||||||||||||||||    
T  4128934 taaatcaattgttttattcgggatttataat--gtgcattgctactagttcaaatacaattaattatatatcgtcctagtgtttttaacaaactttctaa 4128837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 959 - 1021
Target Start/End: Complemental strand, 4126766 - 4126705
Alignment:
Q  959 tttctttgttttttcataggaacgaaagtggaggtcatcaaggatattgttgaaaatgttaca 1021  Q
    ||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||    
T  4126766 tttctttgtattttcataggaacgaatgtg-aggttatcaaggatattgttgaaaatgttaca 4126705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 975 - 1026
Target Start/End: Complemental strand, 4323415 - 4323365
Alignment:
Q  975 taggaacgaaagtggaggtcatcaaggatattgttgaaaatgttacacgttt 1026  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  4323415 taggaacgaaagtg-aggttatcaaggatattgttgaaaatgttacacgttt 4323365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 959 - 1026
Target Start/End: Original strand, 4350904 - 4350970
Alignment:
Q  959 tttctttgttttttcataggaacgaaagtggaggtcatcaaggatattgttgaaaatgttacacgttt 1026  Q
    |||||||||||||| ||||||| ||||||| |||| ||||||| ||||||||||||| ||||||||||    
T  4350904 tttctttgttttttaataggaatgaaagtg-aggttatcaagggtattgttgaaaatattacacgttt 4350970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 967 - 1035
Target Start/End: Complemental strand, 4135865 - 4135799
Alignment:
Q  967 ttttttcataggaacgaaagtggaggtcatcaaggatattgttgaaaatgttacacgttttgcttgaca 1035  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||| |||||||  |||||||||||    
T  4135865 ttttttcataggaacgaaagtg-aggatatcaaggatattgttgaaaaagttacac-atttgcttgaca 4135799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 868 - 913
Target Start/End: Original strand, 4330047 - 4330092
Alignment:
Q  868 ttttactcaaatgtcccctctacttttgacacatacatacataggt 913  Q
    ||||| |||||||| | ||||||||||||||||| |||||||||||    
T  4330047 ttttaatcaaatgttcgctctacttttgacacatgcatacataggt 4330092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 974 - 1035
Target Start/End: Original strand, 4342630 - 4342689
Alignment:
Q  974 ataggaacgaaagtggaggtcatcaaggatattgttgaaaatgttacacgttttgcttgaca 1035  Q
    ||||||| ||||||| |||| ||||| ||||||||||||||||||| ||| |||||||||||    
T  4342630 ataggaatgaaagtg-aggttatcaaagatattgttgaaaatgttatacg-tttgcttgaca 4342689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 229 - 577
Target Start/End: Original strand, 5422053 - 5422401
Alignment:
Q  229 atgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacga 328  Q
    |||||||||| |||||||||||  | || ||||| ||||||||||||||||| |||| | | ||||||||||  |  |||||||  ||||||| ||||||    
T  5422053 atgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgcttctcttcaaaattacggaattaaagttttcagggacga 5422152  T
Q  329 tcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgagaatttctgttgttgtcttctccaaaaactacgctgat 428  Q
    | |||| |||||||| ||| ||| ||| || | | |||| |||| ||||||  |  ||||  |||| ||| |  | || ||||| | ||| ||||| |||    
T  5422153 tgattcgcttcaaagaggagatcacatttcaacatcactcctacgagcaattgaacagtctcgaatgtctatcatagttttctcaacaaattacgcggat 5422252  T
Q  429 tcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatgtacatccctcggaag 528  Q
    || |||||||||||| | |||||| || |||| |||||||||   |||||||   ||||  | || ||||| ||||||| ||| ||| |||| || ||||    
T  5422253 tcacaatggtgtcttgatgagttgttgaaaataatggagtgtcacagaaccattggacaaattgttctgccggtgttcttcgacgtagatccatccgaag 5422352  T
Q  529 ttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaa 577  Q
    | ||| ||||||| ||||| ||||| ||||| |||| ||||||||||||    
T  5422353 tacgtcgtcaaaccggtgaatttggaaaagcatttcaaaatcttttgaa 5422401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 231 - 379
Target Start/End: Original strand, 5173995 - 5174143
Alignment:
Q  231 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 330  Q
    |||||||| ||||| |||||| | ||||| ||| | ||||||||||||||||| |   | |||||||||| |  |||||||| |||||| |||||||||     
T  5173995 gtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacacctatacgcttctcttcaaaacaatggaattagcgtttttaaggacgatg 5174094  T
Q  331 attcccttcaaaggggacatcgcatctctaaaacactactacaagcaat 379  Q
    |||| |||||||| ||| ||| ||| || ||| ||||||||||||||||    
T  5174095 attcacttcaaagaggagatcacatttcaaaatcactactacaagcaat 5174143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 343
Target Start/End: Original strand, 5092790 - 5092902
Alignment:
Q  231 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 330  Q
    |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||| | | || |||||||   |||||||||  ||||| | ||| |||     
T  5092790 gtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgcttcacttcaaaatgctggaattaatgtttttagggatgatg 5092889  T
Q  331 attcccttcaaag 343  Q
    |||| ||||||||    
T  5092890 attcgcttcaaag 5092902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 343
Target Start/End: Complemental strand, 5160750 - 5160638
Alignment:
Q  231 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 330  Q
    |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||| | |  | ||||||| | ||||| ||| |||||| | |||||||     
T  5160750 gtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgctgcacttcaaaacgctggacttaacgtttttagggacgatg 5160651  T
Q  331 attcccttcaaag 343  Q
    |||| ||| ||||    
T  5160650 attctcttgaaag 5160638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 452
Target Start/End: Complemental strand, 5358388 - 5358165
Alignment:
Q  229 atgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctct-ggaattatcgttttcaaggacg 327  Q
    |||||||||||||||| |||||  | |||||||  || |  ||||||||||| |||| | | || |||||||  ||| ||||| | |||||| ||||| |    
T  5358388 atgtgttcttgagtttcagaggagaggacactcatgcttgcttcacttcacatctctatgcttcccttcaaaa-tctcggaatcaacgtttttaaggatg 5358290  T
Q  328 atcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgagaatttctgttgttgtcttctccaaaaactacgctga 427  Q
    ||||||| |||||||||||| ||| ||| || ||| ||||| | |||||||| || || ||   |||||||||| | || ||||| | ||| || || ||    
T  5358289 atcattcacttcaaaggggagatcacatttcaaaatcactaatgcaagcaattcaagattctcaaatttctgttatcgttttctcaacaaattatgcaga 5358190  T
Q  428 ttcgcaatggtgtcttcaagagttg 452  Q
     ||||||||||||||| ||||||||    
T  5358189 atcgcaatggtgtcttgaagagttg 5358165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 5149954 - 5149885
Alignment:
Q  231 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaa 300  Q
    |||||||| |||||||||||  |||| || |||||||||||||||||||| |||| | | ||||||||||    
T  5149954 gtgttcttaagttttagaggggaagatacgcgcgcatcattcacttcacatctctatgcttctcttcaaa 5149885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 379
Target Start/End: Original strand, 5272862 - 5273010
Alignment:
Q  231 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 330  Q
    |||||||| ||||| |||||| | ||||| ||| | |||||||||||||| || |   | |||||||||| |  |||||||| |||||| |||||| ||     
T  5272862 gtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacatctatacgcttctcttcaaaacaatggaattaacgtttttaaggacaatg 5272961  T
Q  331 attcccttcaaaggggacatcgcatctctaaaacactactacaagcaat 379  Q
    |||  |||||||| ||| ||| ||| || ||| ||||||||| ||||||    
T  5272962 atttacttcaaagaggagatcacatttcaaaatcactactactagcaat 5273010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 5070671 - 5070590
Alignment:
Q  229 atgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaat 310  Q
    |||||||||| ||||| |||||  | ||||||||| | |||||||||||||| |||| | | ||||||| || |||||||||    
T  5070671 atgtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatctctatgcttctcttcgaaactctggaat 5070590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 504 - 581
Target Start/End: Original strand, 5340679 - 5340756
Alignment:
Q  504 ttctacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacaga 581  Q
    |||||||||||  ||||||| ||| | |||  ||||||||| || ||||| ||||| |||| ||||||||||||||||    
T  5340679 ttctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaagcatttcaaaatcttttgaacaga 5340756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 755
Target Start/End: Original strand, 45113485 - 45113524
Alignment:
Q  716 ttgtgcttttaaatcaatggttttattcaggatttctaat 755  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  45113485 ttgtgcttttgaatcaatgattttattcaggatttctaat 45113524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 34715254 - 34715183
Alignment:
Q  229 atgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaa 300  Q
    |||||||||||||||| ||||| ||||| ||||||| |  ||| |||||||| |||| ||| ||||||||||    
T  34715254 atgtgttcttgagtttcagagggaaagatactcgcgaaagattgacttcacatctctatacctctcttcaaa 34715183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University