View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5709-Insertion-6 (Length: 345)

Name: NF5709-Insertion-6
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5709-Insertion-6
NF5709-Insertion-6
[»] chr8 (5 HSPs)
chr8 (8-337)||(34935697-34936026)
chr8 (160-286)||(14004315-14004441)
chr8 (220-286)||(5766363-5766429)
chr8 (52-103)||(17642879-17642930)
chr8 (66-102)||(32152043-32152079)
[»] chr4 (9 HSPs)
chr4 (220-298)||(1481869-1481947)
chr4 (160-284)||(6007599-6007723)
chr4 (166-269)||(645282-645385)
chr4 (160-260)||(7308735-7308835)
chr4 (8-103)||(553776-553871)
chr4 (8-95)||(8186311-8186398)
chr4 (64-103)||(53760237-53760276)
chr4 (160-197)||(553928-553965)
chr4 (64-124)||(1755626-1755686)
[»] scaffold1155 (1 HSPs)
scaffold1155 (8-112)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (8-112)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (8-112)||(30584-30688)
[»] chr7 (3 HSPs)
chr7 (8-113)||(7977890-7977995)
chr7 (8-48)||(10169049-10169089)
chr7 (8-48)||(10176574-10176614)
[»] chr6 (1 HSPs)
chr6 (157-198)||(6403762-6403803)
[»] chr3 (1 HSPs)
chr3 (161-213)||(513506-513558)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 34936026 - 34935697
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaactaga 107  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34936026 tcaaagttgtaatattttgtgagaaaactcgcaaaccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaactaga 34935927  T
Q  108 aatttgacatagaagtgtatctagatcaccacagaagcgtttaaagtctagtgaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34935926 aatttgacatagaagtgtatctagatcaccacagaagcgtttaaagtctagtgaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagg 34935827  T
Q  208 gtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagaggaagtgtttggaggcgacagagagagactccatgtagcgttgtttatggt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34935826 gtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagaggaagtgtttggaggagacagagagagactccatgtagcgttgtttatggt 34935727  T
Q  308 tgtcgtcatcatcgttgaggaatcggaaga 337  Q
    ||||||||||||||||||||||||||||||    
T  34935726 tgtcgtcatcatcgttgaggaatcggaaga 34935697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 286
Target Start/End: Original strand, 14004315 - 14004441
Alignment:
Q  160 gaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagagga 259  Q
    |||||||| ||||| |||||||| || |||| ||| |||  ||| |||||| |||   | ||||| ||| ||||||||||||||||||||||||||||||    
T  14004315 gaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacggttggtgacggagagga 14004414  T
Q  260 agtgtttggaggcgacagagagagact 286  Q
    ||||||| ||||||||||| |||||||    
T  14004415 agtgttttgaggcgacagatagagact 14004441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 5766429 - 5766363
Alignment:
Q  220 atagtgagagagaatttgtgacggttggtgacggagaggaagtgtttggaggcgacagagagagact 286  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  5766429 atagttagacagaatttgtgacggttggtgacggagaggaagtgttttgaggcgacagatagagact 5766363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 17642930 - 17642879
Alignment:
Q  52 ggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaac 103  Q
    |||||| || ||||||||||||||||||||||||| || |||||||| ||||    
T  17642930 ggaatggtgagatggttggagagattgagtgatgtgagtttcaatggaaaac 17642879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 32152043 - 32152079
Alignment:
Q  66 gttggagagattgagtgatgtaaggttcaatgggaaa 102  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  32152043 gttggagagattgagtgatgtgaggttcaacgggaaa 32152079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 1481869 - 1481947
Alignment:
Q  220 atagtgagagagaatttgtgacggttggtgacggagaggaagtgtttggaggcgacagagagagactccatgtagcgtt 298  Q
    ||||||||||||||||||| || |||||||||||||||||||||||| || ||||| |||||||||| |||||||||||    
T  1481869 atagtgagagagaatttgtaactgttggtgacggagaggaagtgttttgaagcgactgagagagacttcatgtagcgtt 1481947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 6007599 - 6007723
Alignment:
Q  160 gaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagagga 259  Q
    |||||||||||||  ||||| | ||| |||||||| ||||||||||| ||| ||| | | |||||||||||||||  | ||| |||||||| ||||||||    
T  6007599 gaggtgaggttggggaacctgttgaataggcgagggagggaagggagagttggatgacagatagtgagagagaatcggagactgttggtgatggagagga 6007698  T
Q  260 agtgtttggaggcgacagagagaga 284  Q
    | ||||| ||| |||  ||||||||    
T  6007699 actgtttcgagacgagggagagaga 6007723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 645282 - 645385
Alignment:
Q  166 aggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagaggaagtgtt 265  Q
    ||||||||||||||||| ||||||||||||||| ||||| | || |||||| | || ||||||||||  |   || ||||||||| ||||| ||| ||||    
T  645282 aggttggtaaacctttgaaagaggcgaggaaggaaagggtgcgtctgatcacatatggtgagagagaggtgaagaaggttggtgatggagaagaactgtt 645381  T
Q  266 tgga 269  Q
    ||||    
T  645382 tgga 645385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 7308735 - 7308835
Alignment:
Q  160 gaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagagga 259  Q
    |||||||||||||  |||||||| |||| | |||| ||| ||||| | |||  |  ||| || ||||||||||||||||| |||||||||| ||||||||    
T  7308735 gaggtgaggttggggaacctttgaaagaagtgagggaggaaagggcgtgttgcagaagagatggtgagagagaatttgtggcggttggtgaaggagagga 7308834  T
Q  260 a 260  Q
    |    
T  7308835 a 7308835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 553776 - 553871
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaac 103  Q
    |||||||| |||| ||||| ||||||  |||||||||||||   |||||| |||| |  | |||||||| ||||||||| ||||||||||| ||||    
T  553776 tcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgaggttcaatggaaaac 553871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 8186398 - 8186311
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaa 95  Q
    |||||||| |||||||| | |||| || |||||| ||||||   |||||| |||| | ||| ||||||||||||||||| ||||||||    
T  8186398 tcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaa 8186311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 53760276 - 53760237
Alignment:
Q  64 tggttggagagattgagtgatgtaaggttcaatgggaaac 103  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  53760276 tggttggagagattgagtgatgtgagtttcaatgggaaac 53760237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 553928 - 553965
Alignment:
Q  160 gaggtgaggttggtaaacctttggaagaggcgaggaag 197  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  553928 gaggtgaggttggtgaacctttggaaaaggcgaggaag 553965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 1755626 - 1755686
Alignment:
Q  64 tggttggagagattgagtgatgtaaggttcaatgggaaactagaaatttgacatagaagtg 124  Q
    |||||||||||||| |  |||||||| ||||||||||||| ||| ||||| || |||||||    
T  1755626 tggttggagagattaaacgatgtaagtttcaatgggaaacgagagatttggcagagaagtg 1755686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 1925 - 1821
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaactaga 107  Q
    |||||||| |||||||||| || |||| ||||||||||| |   ||||| ||||| |||| |||||||||||||||||| |||||||||||||||| |||    
T  1925 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 1826  T
Q  108 aattt 112  Q
     ||||    
T  1825 gattt 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 8291 - 8395
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaactaga 107  Q
    |||||||| |||||||||| || |||| ||||||||||| |   ||||| ||||| |||| |||||||||||||||||| |||||||||||||||| |||    
T  8291 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 8390  T
Q  108 aattt 112  Q
     ||||    
T  8391 gattt 8395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 30688 - 30584
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaactaga 107  Q
    |||||||| |||||||||| || |||| ||||||||||| |   ||||| ||||| |||| |||||||||||||||||| |||||||||||||||| |||    
T  30688 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 30589  T
Q  108 aattt 112  Q
     ||||    
T  30588 gattt 30584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 7977890 - 7977995
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaactaga 107  Q
    ||||||||  ||||||||| ||||||| | |||||||||     |||||| | || |||||||||||||||||||| || |  ||||||||||||| |||    
T  7977890 tcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtgacgtgattttcaatgggaaacaaga 7977989  T
Q  108 aatttg 113  Q
    ||||||    
T  7977990 aatttg 7977995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 10169089 - 10169049
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattt 48  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  10169089 tcaaagttctaatattttgagagaaaactcgcaacccattt 10169049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 10176614 - 10176574
Alignment:
Q  8 tcaaagttataatattttgtgagaaaaatcgcaacccattt 48  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  10176614 tcaaagttctaatattttgagagaaaactcgcaacccattt 10176574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 6403762 - 6403803
Alignment:
Q  157 agtgaggtgaggttggtaaacctttggaagaggcgaggaagg 198  Q
    |||||| ||||||||||||| ||||||||||||| |||||||    
T  6403762 agtgagttgaggttggtaaatctttggaagaggcaaggaagg 6403803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 513558 - 513506
Alignment:
Q  161 aggtgaggttggtaaacctttggaagaggcgaggaagggaagggagggtttga 213  Q
    |||||||||||||||| ||  ||| ||||||||| ||| ||||||||||||||    
T  513558 aggtgaggttggtaaatctacggaggaggcgagggaggaaagggagggtttga 513506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University