View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709-Insertion-7 (Length: 270)
Name: NF5709-Insertion-7
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 65 - 270
Target Start/End: Original strand, 9821130 - 9821335
Alignment:
| Q |
65 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
164 |
Q |
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| T |
9821130 |
atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
9821229 |
T |
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| Q |
165 |
aagtcaactagtaaagtaaaatactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
264 |
Q |
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| T |
9821230 |
aagtcaactagtaaagtaaactactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
9821329 |
T |
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| Q |
265 |
atttcg |
270 |
Q |
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|||||| |
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| T |
9821330 |
atttcg |
9821335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 9820459 - 9820513
Alignment:
| Q |
7 |
agtaatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
61 |
Q |
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| T |
9820459 |
agtaatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
9820513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 38693718 - 38693599
Alignment:
| Q |
65 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
164 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| || |||| ||||||||||||||||| |
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| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag |
38693619 |
T |
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| Q |
165 |
aa-gtcaactagtaaagtaa |
183 |
Q |
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|| | |||||||||||||| |
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| T |
38693618 |
aaggaaaactagtaaagtaa |
38693599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 38875382 - 38875481
Alignment:
| Q |
65 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
164 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38875382 |
atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag |
38875478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 38874091 - 38874145
Alignment:
| Q |
7 |
agtaatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
61 |
Q |
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|||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
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| T |
38874091 |
agtaatgacagtataagttcaagatgtatgtttcactaagaaatataaacttacc |
38874145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 38875620 - 38875693
Alignment:
| Q |
186 |
tactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttg |
259 |
Q |
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||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |||| |||||||| |
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| T |
38875620 |
tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttg |
38875693 |
T |
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