View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_high_2 (Length: 627)
Name: NF5709_high_2
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_high_2 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Complemental strand, 45846339 - 45845742
Alignment:
| Q |
18 |
tctccttggtctatgtttacaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttctttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45846339 |
tctccttggtctatgtttacaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttctttta |
45846240 |
T |
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| Q |
118 |
tgtggccaagaagaagatatagctacacaagctcaaatctatcttctatattccattcctgatctcatagcacaatcgtttttacaccctttaagaattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45846239 |
tgtggccaagaagaagatatagctacacaagctcaaatctatcttctatattccattcctgatctcttagcacaatcgtttttacaccctttaagaattt |
45846140 |
T |
|
| Q |
218 |
accttagaagccaatccattactctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattttcttgtttctcacctcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45846139 |
accttagaagccaatccattactctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattttcttgtttctcacctcaa |
45846040 |
T |
|
| Q |
318 |
tatgggaatcaaaggtgtagctttaagtggggtgtggacaaatttcaaccttgttgcaactttgatactttacatagttttctctggcacacacaagaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45846039 |
tatgggaatcaaaggtgtagctttaagtggggtgtggacaaatttcaaccttgttgcatctttgatactttacatagttttctctggcacgcacaagaaa |
45845940 |
T |
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| Q |
418 |
acatggggtggtttttcatcacaatgtttcaaacaatggaaatcacttcttaatttagctgtaccaagttgtctttctgtttgccttgaatggtggtggt |
517 |
Q |
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| T |
45845939 |
acatggggtggtttttcatcacaatgtttcaaacaatggaaatcacttcttaatttagctgtaccaagttgtctttctgtttgccttgaatggtggtggt |
45845840 |
T |
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| Q |
518 |
atgaaatcatgatcttgttatgtggtttgttgataaatccaagagcaaccgttgcttctatgggaattttgattcaaactacttctttgctatatatt |
615 |
Q |
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| T |
45845839 |
atgaaatcatgattttgttatgtggtttgttgataaatccaagagcaaccgttgcttctatgggaattttgattcaaactacttctttgctatatatt |
45845742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 123 - 383
Target Start/End: Original strand, 23883 - 24143
Alignment:
| Q |
123 |
ccaagaagaagatatagctacacaagctcaaatctatcttctatattccattcctgatctcatagcacaatcgtttttacaccctttaagaatttacctt |
222 |
Q |
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| T |
23883 |
ccaagatgaagaaatagcaacaatggctcaaacttatattctatattcaattcctgatcttattgctcaatcctttatacaccctttgagaatttactta |
23982 |
T |
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| Q |
223 |
agaagccaatccattactctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattttcttgtttctcacctcaatatgg |
322 |
Q |
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|| | |||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||| || ||||| |||||||||||| | || ||| ||| |
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| T |
23983 |
aggactcaatccattactcttcctcttacactttgtgcaactttttcaatccttcttcacataccaataaattattttcttgttatatatcttaatttgg |
24082 |
T |
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| Q |
323 |
gaatcaaaggtgtagctttaagtggggtgtggacaaatttcaaccttgttgcaactttgat |
383 |
Q |
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| T |
24083 |
gtataaaaggagttgctttaagtggggtatggacaaatttcaaccttgttgcttctttgat |
24143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 2990069 - 2990201
Alignment:
| Q |
173 |
ttcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaagccaatccattactctgcctctcacactttgtgctactttagcaat |
272 |
Q |
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|||||||||| |||||||||| || |||||||||| ||||| || ||| ||||||||||||| || || ||| | ||| |||||||||| | || |
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| T |
2990069 |
ttcctgatcttgtagcacaatcattgctacaccctttgagaatctatcttcgaagccaatccataacacttcctttaacatacagtgctactttgtctat |
2990168 |
T |
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| Q |
273 |
ttttcttcacattcccataaactattttcttgt |
305 |
Q |
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| T |
2990169 |
tcttcttcacattcctataaactattttcttgt |
2990201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 596
Target Start/End: Original strand, 2990296 - 2990492
Alignment:
| Q |
400 |
tctggcacacacaagaaaacatggggtggtttttcatcacaatgtttcaaacaatggaaatcacttcttaatttagctgtaccaagttgtctttctgttt |
499 |
Q |
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||||| |||||||||||||||||| |||| |||| || ||||||||| ||||||||| ||| | |||||||| | ||||| || |||| |||| |
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| T |
2990296 |
tctggaacacacaagaaaacatggagtggaatttcctctgcttgtttcaaaggatggaaatcgcttttgaatttagcaattccaagctgcatttcggttt |
2990395 |
T |
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| Q |
500 |
gccttgaatggtggtggtatgaaatcatgatcttgttatgtggtttgttgataaatccaagagcaaccgttgcttctatgggaattttgattcaaac |
596 |
Q |
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| T |
2990396 |
gtctcgaatggtggtggtacgaaatcatgattttgctttgtggattattgcttaatccacatgcaactgttgcatctatgggtgtgttgattcaaac |
2990492 |
T |
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