View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_high_5 (Length: 364)
Name: NF5709_high_5
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 39 - 364
Target Start/End: Complemental strand, 49374600 - 49374275
Alignment:
| Q |
39 |
tataattatatccaatccaaataggaaaaacggagggaagggaaagtgaaaggcgggtgaaaagaaaaccgttataaagattagagacgttcgcgtaacc |
138 |
Q |
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| T |
49374600 |
tataattatatccaatccaaataggaaaaacggagggaagggaaagtgaaaggcgggtgaaaagaaaaccgttataaagattagagacgttcgcgtaacc |
49374501 |
T |
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| Q |
139 |
gtcatcaacgtctacgaaacaaacaatattaacgtctttcagaaatcagaattcagatccaagttccatttctagaacgagnnnnnnnnnnnnnnnnnnn |
238 |
Q |
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| T |
49374500 |
gtcatcaacgtctacgaaacaaacaatattaacgtctttcagaaatcagaattcagatccaagttccatttctagaacgagtctcttcttcttcttcttc |
49374401 |
T |
|
| Q |
239 |
nnngcgcaatcgaggacgctacgagtgaaatcatgagtgaattgacttcagtatcaaacgagagtcctcggcgatctctgagcattcaactttcttccat |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49374400 |
ttcgcgcaatcgaggacgctacgagtgaaatcatgagtgaattgacttcagtatcaaacgagagtcctcggcgatctctgagcattcaactttcttccat |
49374301 |
T |
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| Q |
339 |
gattatcgccgatagcactttaccct |
364 |
Q |
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| T |
49374300 |
gattatcgtcgattgcactttaccct |
49374275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 22274466 - 22274502
Alignment:
| Q |
12 |
atagggaccaagaacatatttaacccttataattata |
48 |
Q |
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| T |
22274466 |
atagggaccaaaaacatatttaacccttataattata |
22274502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 34448709 - 34448672
Alignment:
| Q |
12 |
atagggaccaagaacatatttaacccttataattatat |
49 |
Q |
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| T |
34448709 |
atagggaccaaaaacatatttaacccttataatgatat |
34448672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 27727125 - 27727089
Alignment:
| Q |
12 |
atagggaccaagaacatatttaacccttataattata |
48 |
Q |
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||||||||||| |||||||||||||||||| |||||| |
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| T |
27727125 |
atagggaccaaaaacatatttaacccttattattata |
27727089 |
T |
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