View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_low_10 (Length: 314)
Name: NF5709_low_10
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 9820185 - 9820464
Alignment:
| Q |
13 |
aatatcaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcattccctaatatatctc |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9820185 |
aataccaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcagcaagcattccctaatatatctc |
9820284 |
T |
|
| Q |
113 |
tccattgttctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgaggtccatcagtcactg |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9820285 |
tccattgtt-----ccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgagggccatcagtcactg |
9820379 |
T |
|
| Q |
213 |
gaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9820380 |
gaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccaaaaagatcaacttaactcacagtaaagtaat |
9820464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 38873752 - 38873924
Alignment:
| Q |
13 |
aatatcaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcattccctaatatatctc |
112 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||||||| |||||||||||||||||||||| |
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| T |
38873752 |
aataccaaatgaagaaataggaaaatatacaaagttcagatttcag-------gcacgcattaactttctgtctgcagcaagcattccctaatatatctc |
38873844 |
T |
|
| Q |
113 |
tccattgttctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgag |
197 |
Q |
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| T |
38873845 |
tctattgttc-----cttccacattaattagagccaacagcaaagatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38873924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 38873994 - 38874096
Alignment:
| Q |
195 |
gaggtccatcagtcactggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagt |
294 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| | |||| |
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| T |
38873994 |
gagggccatcagtcactggaaaagtaaagataaaatgcaacaatgatctcagaatcatacgtatttctaccacaaagatcaactcaactcacaatgaagt |
38874093 |
T |
|
| Q |
295 |
aat |
297 |
Q |
| |
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||| |
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| T |
38874094 |
aat |
38874096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 38694447 - 38694279
Alignment:
| Q |
21 |
atgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcattccctaatatatctctccattgt |
120 |
Q |
| |
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||||||||||||||||||||| | || | ||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||| | | |
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| T |
38694447 |
atgaagaaataggaaaatatata-----cacagttcagatttcaagcgcgtattaactttctgtctgcagcaagcattccctaatatctctctc---tct |
38694356 |
T |
|
| Q |
121 |
tctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgag |
197 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38694355 |
attgttccttccgcattaattagagccaacagcaaagatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38694279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 38694203 - 38694151
Alignment:
| Q |
200 |
ccatcagtcactggaaaagcaaa-gataaaatgcaacaatgatcttagaatca |
251 |
Q |
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||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
38694203 |
ccatcagtcactggaaaggaaaacgataaaatgcaacaatgatcttagaatca |
38694151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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