View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5709_low_11 (Length: 310)
Name: NF5709_low_11
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_11 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 30385899 - 30385614
Alignment:
| Q |
25 |
tacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30385899 |
tacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctac |
30385800 |
T |
|
| Q |
125 |
ttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaaatgtgaaattgttttgtctaaaacatgagattgagattcctgac |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30385799 |
ttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaaatgtgaaattgttttgtctaaaacatgagatagagattcctgac |
30385700 |
T |
|
| Q |
225 |
atgagtgcacaatatgtcttggaaagaggtcgatcccatcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
310 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30385699 |
atgagtgcacaatatgtcttgggaagaggtcgatcccgtcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
30385614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 305097 - 304812
Alignment:
| Q |
25 |
tacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
305097 |
tacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctac |
304998 |
T |
|
| Q |
125 |
ttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaaatgtgaaattgttttgtctaaaacatgagattgagattcctgac |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
304997 |
ttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaaatgtgaaattgttttgtctaaaacatgagatagagattcctgac |
304898 |
T |
|
| Q |
225 |
atgagtgcacaatatgtcttggaaagaggtcgatcccatcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
310 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
304897 |
atgagtgcacaatatgtcttgggaagaggtcaatcccgtcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
304812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 25 - 310
Target Start/End: Original strand, 2829020 - 2829305
Alignment:
| Q |
25 |
tacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2829020 |
tacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctac |
2829119 |
T |
|
| Q |
125 |
ttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaaatgtgaaattgttttgtctaaaacatgagattgagattcctgac |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2829120 |
ttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaaatgtgaaattgttttgtctaaaacatgagatagagattcctgac |
2829219 |
T |
|
| Q |
225 |
atgagtgcacaatatgtcttggaaagaggtcgatcccatcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
310 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2829220 |
atgagtgcacaatatgtcttgggaagaggtcaatcccgtcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
2829305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 32824274 - 32823989
Alignment:
| Q |
25 |
tacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32824274 |
tacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctac |
32824175 |
T |
|
| Q |
125 |
ttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaaatgtgaaattgttttgtctaaaacatgagattgagattcctgac |
224 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32824174 |
ttcaaaattacttcttcagcaactgagaaatgatggatggcctaatttgttagaaaatgtgaaattgttttgtctaaaacatgagatagagattcctgac |
32824075 |
T |
|
| Q |
225 |
atgagtgcacaatatgtcttggaaagaggtcgatcccatcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
310 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32824074 |
atgagagcacaatatgtcttaggaagaggtcgatcccgtcaaacaaatgtaactatggtgcatcactatagggttgatattttctt |
32823989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 24784062 - 24783859
Alignment:
| Q |
28 |
acttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatcacgctctcaagacattttaaatgcaatgcatcttgtttctacttc |
127 |
Q |
| |
|
||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
24784062 |
acttgatgtttgagaaaatgggaataaataatattctttgtcaagcattgcaatcacgctctcaaaacattttaaatgcaatgcattttgtttctacttc |
24783963 |
T |
|
| Q |
128 |
aaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaaatgtgaaattgttttgtctaaaacatgagattgagattcctgacatg |
227 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| | |||||| ||||| |
|
|
| T |
24783962 |
aaaattacttcttcaacaactgaaaaatgatggatggtctaatttgctagaaaatgtgaaattgttttgtctaaaacacgagatatatattccttacatg |
24783863 |
T |
|
| Q |
228 |
agtg |
231 |
Q |
| |
|
|||| |
|
|
| T |
24783862 |
agtg |
24783859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 13769514 - 13769608
Alignment:
| Q |
216 |
attcctgacatgagtgcacaatatgtcttggaaagaggtcgatcccatcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13769514 |
attcctgacatgagtgcacaatatgtcttgggaagaggtcgatcccgtcaaacaaatgtaactatggtgcatcactataggattgatattttctt |
13769608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University