View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_low_12 (Length: 289)
Name: NF5709_low_12
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 35436083 - 35435821
Alignment:
| Q |
17 |
aggaaggatggaccctaattaaaggaaacagacaatacatannnnnnnnn--aagaggacaatacattatcttctataaagttctaaaacttgtagnnnn |
114 |
Q |
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| T |
35436083 |
aggaaggatggaccctaattaaaggaaacagacaatacatatatttttttttaagaggacaatacattatcttctataaagttctaaaacttgtagaaaa |
35435984 |
T |
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| Q |
115 |
nnnntaaaattcactgatatatagcaataatatatcctcttattaaatgtcgatatcttaatcatagttcaaactacgaagaagtaggaaactaaaacaa |
214 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
35435983 |
aaa-taaaattcactgatatatagcaataatatattctcttattaaatgttgatctcttaatcatagttcaaaccacgaagaggtaggaaactaaaacaa |
35435885 |
T |
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| Q |
215 |
atggtaaaatgccacaaagcacctctaccaagagccacctctttccccaaccgccaccgttctt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35435884 |
atggtaaaatgccacaaagcacctctaccaagagccacctctttccccaaccgccaccgttctt |
35435821 |
T |
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