View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_low_13 (Length: 273)
Name: NF5709_low_13
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_13 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 45792437 - 45792688
Alignment:
| Q |
17 |
atctctttctaccgtattacagatctggtaatttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtggaattg |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792437 |
atctctttctaccgtattacagatctaataatttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtggaattg |
45792536 |
T |
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| Q |
117 |
gggtcaaatctgtaatagatcatagatggcgttgaagagttatggagcaaaag------gtggatgtggatgaatggggaggagacagaccatgaacaat |
210 |
Q |
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| T |
45792537 |
gggtcaaatctgtaatagatcatagatggcgttgaagagttatggagcaaaaggtggatgtggatgtggatgaatggggaggagacagaccatgaacaat |
45792636 |
T |
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| Q |
211 |
taattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
264 |
Q |
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||||| |||||||||||||||||| |||||| ||||||||||||||| ||||| |
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| T |
45792637 |
taatt--gagagagggcaaaataagaattataatgctaatcatgataggataat |
45792688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 50004784 - 50004906
Alignment:
| Q |
140 |
agatggcgttgaagagttatggagcaaaaggtggatgtggatgaatggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggatt |
239 |
Q |
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| T |
50004784 |
agatggcgttgaaaagttatgggggaagaggtagaggtcgatggatggagagaagagagaatgtgaacgatgaattgagtgag--ggtaaaataaggatt |
50004881 |
T |
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| Q |
240 |
atagtgctaatcatgatagaataat |
264 |
Q |
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| T |
50004882 |
ctagtgctaatcatgataggataat |
50004906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 7670729 - 7670482
Alignment:
| Q |
17 |
atctctttctaccgtattacagatctggtaatttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtggaattg |
116 |
Q |
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|||||||||||||||||||||||| || |||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
7670729 |
atctctttctaccgtattacagatatgataatttgttaccaattcacaataaacaaacaattatgcatgtgcatgaaaaagtgattgtatggtggaattg |
7670630 |
T |
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| Q |
117 |
gggtcaaatctgtaatagatcatagatggcgttgaagagttatggagcaaaaggtggatgtggatgaatggggaggagacagaccatgaacaattaattg |
216 |
Q |
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| T |
7670629 |
gggtcaaatccgtaacatatcatagatggcgttaaagagttatggagcaagaggtggatgtggatgaatggggaggagacaaaccatgaacaattaattg |
7670530 |
T |
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| Q |
217 |
agagagagggcaaaataaggattatagtgctaatcatgatagaataat |
264 |
Q |
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| T |
7670529 |
agagagagggcaaaataaggattataatgctaatcatgataggataat |
7670482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 264
Target Start/End: Complemental strand, 18665440 - 18665265
Alignment:
| Q |
89 |
aggaaaaagtgattgtatggtggaattggggtcaaatctgt----aatagatcatagatggcgttgaagagttatggagcaaaaggtggatgtggatgaa |
184 |
Q |
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||||||||||||||||| ||| |||||||||| | |||| | |||||| | |||||| ||||||||||||||||| || |||| | || || | |
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| T |
18665440 |
aggaaaaagtgattgtagggtagaattggggttagatctctgacaaataga--agagatggggttgaagagttatggagaaagaggtagtggtcaattga |
18665343 |
T |
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| Q |
185 |
tggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
264 |
Q |
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| T |
18665342 |
tggagagaagaaagaacatgaacgatgaattgagagag--ggcaaaataaggattttagtgctaatcatgataggataat |
18665265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 40029168 - 40028927
Alignment:
| Q |
24 |
tctaccgtattacagatctggtaatttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtggaattggggtcaa |
123 |
Q |
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|||||| | ||| |||||| ||| |||||| ||||||||||| |||||||||||| | | ||| ||||||||||||||||| | |||||||||| ||| |
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| T |
40029168 |
tctaccatgttatagatctaataaattgttaccaattcacaacaaacaaacaattaagtatgtgtaggaaaaagtgattgtaggatggaattgggatcag |
40029069 |
T |
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| Q |
124 |
atctgtaatagatcatagatggcgttgaagagttatggagcaaaaggtggatgtggatg--aatgg--ggaggagacagaccatgaacaattaattgaga |
219 |
Q |
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| T |
40029068 |
atc-gtaacaaatcatggatggtattgaagagttacggagcaagaggtagatgtcaatgtcaatggatggagaggagatagtatgaacaatgaatt--ga |
40028972 |
T |
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| Q |
220 |
gagagggcaaaataaggattatagtgctaatcatgatagaataat |
264 |
Q |
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| T |
40028971 |
aagagggcaaaataagaattctagcgctaatcatgataggataat |
40028927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 273
Target Start/End: Original strand, 45980343 - 45980477
Alignment:
| Q |
140 |
agatggcgttgaagagttatggagcaaaaggtggatgtggatgaatggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggatt |
239 |
Q |
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||||||||||||| ||||||| || || |||| || || |||| |||| ||| ||| ||| ||||| | || |||||| |||||||||||| |||| ||| |
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| T |
45980343 |
agatggcgttgaatagttatgaaggaagaggtagaggtcgatggatggagagcagagagaacatgagcgatgaattgaaagagagggcaaattaagaatt |
45980442 |
T |
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| Q |
240 |
atagtgctaatcatgatagaataa-tctacccacc |
273 |
Q |
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|||||||||||||||||| |||| |||||||||| |
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| T |
45980443 |
ttagtgctaatcatgataggataattctacccacc |
45980477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 10026594 - 10026542
Alignment:
| Q |
212 |
aattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
264 |
Q |
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|||||||||| ||||||||||||| ||| ||||||||||||| |||| ||||| |
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| T |
10026594 |
aattgagagaaagggcaaaataagaattctagtgctaatcataataggataat |
10026542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 39645061 - 39645009
Alignment:
| Q |
212 |
aattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
264 |
Q |
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|||||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
39645061 |
aattgaaagagagggcaaaataagaatttaagtgctaatcatgataggataat |
39645009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 47038731 - 47038632
Alignment:
| Q |
140 |
agatggcgttgaagagttatggagcaaaaggtggatgtggatgaatggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggatt |
239 |
Q |
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|||||| ||||||||||||||||| || |||| || || |||| |||| || ||| | | ||||||| || |||||||||| |||| |||||||||||| |
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| T |
47038731 |
agatggtgttgaagagttatggaggaagaggttgaggtcgatggatggagatcagagaaaacatgaacgatgaattgagagaaagggtaaaataaggatt |
47038632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 264
Target Start/End: Original strand, 44763904 - 44764080
Alignment:
| Q |
92 |
aaaaagtgattgtatggtggaattggggtcaaatctgtaatagatc--atagatggcgttgaagagttatggagcaaaaggtggatgtggatgaatgggg |
189 |
Q |
| |
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|||||||||||||| |||||||||||||| | || ||| ||| || | |||||| ||||||||||||||||| || |||| || || |||| |||| | |
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| T |
44763904 |
aaaaagtgattgtagggtggaattggggttagatttgtgataaatagaagagatggtgttgaagagttatggaggaagaggtagaggtcgatgcatggag |
44764003 |
T |
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| Q |
190 |
ag--gagacagaccatgaacaattaattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
264 |
Q |
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| |||| ||| ||||||| || ||| |||||| |||| |||||||| ||| || | ||||||||||||| ||||| |
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| T |
44764004 |
atcagagagagaacatgaacgatgaatggagagaaagggtaaaataagaattttaatactaatcatgataggataat |
44764080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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