View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_low_14 (Length: 251)
Name: NF5709_low_14
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 1900176 - 1899934
Alignment:
| Q |
1 |
taaccttgtattgtatcaatgtgttattaataaatgctcttattctgatatgtcttcctgtagtgcaatgaatgatttggtggacaaattctctactgct |
100 |
Q |
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| T |
1900176 |
taaccttgtattgtatccatgtgttattaataaatgctctttttctgatatgtcttcctgtagtgcaatgaatgatttggtggacaaattctctactgct |
1900077 |
T |
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| Q |
101 |
tatgatagacataccagaaggggtggacgaactgctttcatgtgaatgttgccttgtgctcggttctagatgtcttgctttggacagcttcgacgcactt |
200 |
Q |
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| T |
1900076 |
tatgatagacataccagaaggggtgggcgaactgctttcatgtgaatgttgccttgtgctcgtttctagatgtcttgttttggacagcttcgacgcactt |
1899977 |
T |
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| Q |
201 |
ttccaactctgtaggcacagatttttgtcttcttctctctgct |
243 |
Q |
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| T |
1899976 |
ttccaactctataggcacagatttttgtcttcttctctttgct |
1899934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 1909622 - 1909380
Alignment:
| Q |
1 |
taaccttgtattgtatcaatgtgttattaataaatgctcttattctgatatgtcttcctgtagtgcaatgaatgatttggtggacaaattctctactgct |
100 |
Q |
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| T |
1909622 |
taaccttgtattgtatccatgtgttattaataaatgctctttttctgatatgtcttcctgtagtgcaatgaatgatttggtggacaaattctctactgct |
1909523 |
T |
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| Q |
101 |
tatgatagacataccagaaggggtggacgaactgctttcatgtgaatgttgccttgtgctcggttctagatgtcttgctttggacagcttcgacgcactt |
200 |
Q |
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| T |
1909522 |
tatgatagacataccagaaggggtgggcgaactgctttcatgtgaatgttgccttgtgctcgtttctagatgtcttgttttggacagcttcgacgcactt |
1909423 |
T |
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| Q |
201 |
ttccaactctgtaggcacagatttttgtcttcttctctctgct |
243 |
Q |
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| T |
1909422 |
ttccaactctataggcacagatttttgtcttcttctctttgct |
1909380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 51 - 243
Target Start/End: Complemental strand, 1893208 - 1893017
Alignment:
| Q |
51 |
tgtcttcctgtagtgcaatgaatgatttggtggacaaattctctactgcttatgatagacataccagaaggggtggacgaactgctttcatgtgaatgtt |
150 |
Q |
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| T |
1893208 |
tgtcttcctgtagtgcaatgaatgatttggtggacaaattctctactgcttatgatagacataccagaaggggtggacgaactgctttca-gtgaatgtt |
1893110 |
T |
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| Q |
151 |
gccttgtgctcggttctagatgtcttgctttggacagcttcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctctgct |
243 |
Q |
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| T |
1893109 |
gccttgtgctcgtttctagatgtcttgttttggacagcttcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctttgct |
1893017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2935134 - 2935373
Alignment:
| Q |
1 |
taaccttgtattgtatcaatgtgtt--attaataaatgctcttatt-ctgatat--gtcttcctgtagtgcaatgaatgatttggtggacaaattctcta |
95 |
Q |
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|||| |||||||||||| ||||||| ||||||| |||||||| || || | || ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2935134 |
taactttgtattgtatccatgtgttgtattaatacatgctcttttttcttaaatctgtcttcctgtagtgcaatg----atttggtggacaaattctcta |
2935229 |
T |
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| Q |
96 |
ctgcttatgatagacataccagaaggggtggacgaactgctttcatgtgaatgttgccttg-tgctcggttctagatgtcttgctttggacagcttcgac |
194 |
Q |
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| T |
2935230 |
ctgcttatgatagacataccagaaggggtggacgaactgctttcatgtgaatgtcgccttgttgctcgtttctagatgtcttgctttggacagcttcgat |
2935329 |
T |
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| Q |
195 |
gcacttttccaactctgtaggcacagatttttgtcttcttctct |
238 |
Q |
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| T |
2935330 |
gcacttttcccactctgtaggcacaaatttttgtcttcttctct |
2935373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 238
Target Start/End: Original strand, 2930198 - 2930321
Alignment:
| Q |
116 |
agaaggggtggacgaactgctttcatgtgaatgttgccttgt-gctcggttctagatgtcttgctttggacagcttcgacgcacttttccaactctgtag |
214 |
Q |
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| T |
2930198 |
agaaggggtggacaaactgctttcatgtgaatgttgccttgttgctcgtttctagatgtcttgctttggacagcttcgacgcacgtttccaactctgtag |
2930297 |
T |
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| Q |
215 |
gcacagatttttgtcttcttctct |
238 |
Q |
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| T |
2930298 |
gcacagatttttgtcttcttctct |
2930321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 1902654 - 1902579
Alignment:
| Q |
51 |
tgtcttcctgtagtgcaatgaatgatttggtggacaaattctctactgcttatgatagacataccagaaggggtgg |
126 |
Q |
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| T |
1902654 |
tgtcttcctgtagtgcaatgaatgatttggtggacaaattctctactgcttatgatagacataccagaaggggtgg |
1902579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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