View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5709_low_15 (Length: 239)

Name: NF5709_low_15
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5709_low_15
NF5709_low_15
[»] chr5 (12 HSPs)
chr5 (17-239)||(14868260-14868482)
chr5 (113-235)||(6612295-6612418)
chr5 (113-190)||(17971956-17972034)
chr5 (95-220)||(31124166-31124292)
chr5 (113-164)||(464843-464894)
chr5 (113-190)||(4926730-4926808)
chr5 (113-190)||(8248571-8248648)
chr5 (111-159)||(19315135-19315183)
chr5 (110-156)||(8487968-8488014)
chr5 (85-158)||(16861425-16861498)
chr5 (110-162)||(804527-804579)
chr5 (171-235)||(42457686-42457750)
[»] chr6 (12 HSPs)
chr6 (20-239)||(10303212-10303432)
chr6 (94-233)||(24639080-24639218)
chr6 (101-235)||(18031787-18031922)
chr6 (113-234)||(11012353-11012475)
chr6 (113-190)||(34520480-34520558)
chr6 (113-235)||(34018062-34018186)
chr6 (113-235)||(32528958-32529081)
chr6 (113-234)||(19153386-19153508)
chr6 (133-235)||(6359972-6360075)
chr6 (104-236)||(22732644-22732778)
chr6 (113-190)||(31454140-31454218)
chr6 (110-158)||(17292898-17292946)
[»] chr4 (6 HSPs)
chr4 (47-235)||(19233288-19233477)
chr4 (110-191)||(13136998-13137080)
chr4 (114-206)||(40435066-40435159)
chr4 (90-158)||(16584311-16584379)
chr4 (113-206)||(4898927-4899021)
chr4 (113-206)||(13157352-13157446)
[»] chr7 (6 HSPs)
chr7 (39-233)||(10275328-10275523)
chr7 (60-220)||(37237869-37238030)
chr7 (83-159)||(16559982-16560058)
chr7 (83-159)||(16605604-16605680)
chr7 (95-159)||(14315524-14315588)
chr7 (114-235)||(24286338-24286460)
[»] chr1 (13 HSPs)
chr1 (70-220)||(51800428-51800579)
chr1 (48-236)||(9484701-9484890)
chr1 (113-235)||(3926643-3926766)
chr1 (113-207)||(27099670-27099765)
chr1 (113-235)||(33134295-33134418)
chr1 (113-235)||(44889126-44889249)
chr1 (74-153)||(8397854-8397933)
chr1 (108-206)||(46271928-46272027)
chr1 (81-164)||(48610929-48611012)
chr1 (112-158)||(40708576-40708622)
chr1 (98-209)||(42450708-42450820)
chr1 (115-164)||(10252146-10252195)
chr1 (114-158)||(25529965-25530009)
[»] chr2 (8 HSPs)
chr2 (113-223)||(9583489-9583600)
chr2 (23-209)||(13880556-13880743)
chr2 (23-209)||(14020681-14020868)
chr2 (98-209)||(18948701-18948813)
chr2 (113-206)||(5589526-5589620)
chr2 (110-209)||(38408905-38409005)
chr2 (60-223)||(32151439-32151603)
chr2 (95-159)||(39117321-39117385)
[»] chr3 (9 HSPs)
chr3 (116-234)||(42105685-42105803)
chr3 (72-159)||(31050552-31050639)
chr3 (113-180)||(44781768-44781836)
chr3 (110-189)||(25408683-25408762)
chr3 (74-220)||(39770793-39770940)
chr3 (113-235)||(43695703-43695826)
chr3 (82-164)||(35503817-35503899)
chr3 (95-159)||(51346358-51346422)
chr3 (72-158)||(11452976-11453062)
[»] chr8 (2 HSPs)
chr8 (114-235)||(1590291-1590413)
chr8 (95-155)||(459222-459282)
[»] scaffold0078 (1 HSPs)
scaffold0078 (95-156)||(147-208)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 14868482 - 14868260
Alignment:
Q  17 atttcttcggtcctcccgttatatgcaacaaatcatttcaatgagttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttattt 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14868482 attttttcggtcctcccgttatatgcaacaaatcatttcaatgagttcagctctggtggtggtggctctaagctgcggcaatctattttgcatgttattt 14868383  T
Q  117 ggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattactt 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14868382 ggtttgctatcgtgtaggaaatatgaaaagaaagaaataacagaattttaacgataaataatgctcaattatgcaattagtggacaaaattaaattactt 14868283  T
Q  217 tccttcttgtgattgaaggcaaa 239  Q
    ||||||||||| |||||||||||    
T  14868282 tccttcttgtggttgaaggcaaa 14868260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 6612295 - 6612418
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaattt-caacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    |||||||||||||| ||||  |||||||| ||||||||||||||||| |||| ||||| |||||||||||| ||||||| |||||||| ||||||||| |    
T  6612295 atttggtttgctactgtgtgagaaatatggaaagaaagaaataacaggattttcaacggtaaagaatgctcgattatgcgattagtgggcaaaattaagt 6612394  T
Q  212 tactttccttcttgtgattgaagg 235  Q
    || ||||||||| ||| |||||||    
T  6612395 tattttccttctcgtggttgaagg 6612418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 17972034 - 17971956
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaattt-caacgataaagaatgctcaattatgc 190  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||| ||||| ||| ||||||||| |||| |||||||    
T  17972034 atttggtttgctactgtgtgggaaatatggaaagaaagaaataacataatttccaatgataaagaaagctcgattatgc 17971956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 31124166 - 31124292
Alignment:
Q  95 caatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaat 193  Q
    |||||||| |||||| | |||||||||||||| |||| |||||| || |||||||||||||||| || |||||| | |||||| ||||| || | |        
T  31124166 caatctatcttgcatttgatttggtttgctactgtgtgggaaatctggaaagaaagaaataacaggattttcaatgctaaagagtgctcgataacggtgc 31124265  T
Q  194 tagtggacaaaattaaattactttcct 220  Q
    |||||||||||||||| || |||||||    
T  31124266 tagtggacaaaattaagttgctttcct 31124292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 464843 - 464894
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaattt 164  Q
    |||||||||||||| ||||  |||||||||||||||| ||||||||||||||    
T  464843 atttggtttgctacagtgtgagaaatatgaaaagaaaaaaataacagaattt 464894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 4926730 - 4926808
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgc 190  Q
    |||||||||||||| ||||  ||||| || |||||||||||||||| || |||||  |||||||||||| |||||||||    
T  4926730 atttggtttgctactgtgtgagaaatttggaaagaaagaaataacatgattttcattgataaagaatgcccaattatgc 4926808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 8248648 - 8248571
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgc 190  Q
    |||||||||||||| |||| |||| | ||||||||||||||||||| || |||||| ||||||||| |||| |||||||    
T  8248648 atttggtttgctactgtgtgggaa-tctgaaaagaaagaaataacaaaattttcaatgataaagaaagctcgattatgc 8248571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 19315183 - 19315135
Alignment:
Q  111 ttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag 159  Q
    ||||||||||||||||||| | |||||| || |||||||||||||||||    
T  19315183 ttatttggtttgctaccgtttgggaaatttggaaagaaagaaataacag 19315135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 8487968 - 8488014
Alignment:
Q  110 gttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataa 156  Q
    |||||||||||||| || |||| ||||||||| ||||||||||||||    
T  8487968 gttatttggtttgcaacagtgtgggaaatatggaaagaaagaaataa 8488014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 16861498 - 16861425
Alignment:
Q  85 taagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca 158  Q
    |||| ||| |||||| ||| ||||| | ||||| |||||||  |||| ||||||||| ||||||||||||||||    
T  16861498 taaggtgcggcaatccattatgcatctgatttgatttgctagtgtgtgggaaatatggaaagaaagaaataaca 16861425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 804579 - 804527
Alignment:
Q  110 gttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaat 162  Q
    |||||||||||||| || ||||  ||||| || ||||||||||||||||||||    
T  804579 gttatttggtttgcaacagtgtgagaaatttggaaagaaagaaataacagaat 804527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 42457686 - 42457750
Alignment:
Q  171 taaagaatgctcaattatgcaattagtggacaaaattaaattactttccttcttgtgattgaagg 235  Q
    |||||| |||||||||||||  ||||||||||||||||| ||| | || |||| ||| |||||||    
T  42457686 taaagagtgctcaattatgcgtttagtggacaaaattaagttattctctttctcgtggttgaagg 42457750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 10303432 - 10303212
Alignment:
Q  20 tcttcggtcctcccgttatatgcaacaaatcatttcaatgagttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttatttggt 119  Q
    ||||||||||||||||  ||||||||  ||||||||  | ||||||| | ||| ||||||||||||||| |||  |||||||| ||||| ||||||||||    
T  10303432 tcttcggtcctcccgtattatgcaacggatcatttccctcagttcagttttggcggtggtggctctaaggtgcgacaatctatcttgcaggttatttggt 10303333  T
Q  120 ttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattactttc 218  Q
    ||||||  |||| ||||||||| ||||||||||||| || || |||||||| |||||||||||| || |||| ||||||||| |||||||| ||||||||    
T  10303332 ttgctattgtgtgggaaatatggaaagaaagaaatagcaggactttcaacggtaaagaatgctcgataatgcgattagtggataaaattaagttactttc 10303233  T
Q  219 cttcttgtgattgaaggcaaa 239  Q
    ||||| ||| ||||| |||||    
T  10303232 cttctcgtggttgaaagcaaa 10303212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 24639080 - 24639218
Alignment:
Q  94 gcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaa 192  Q
    |||||| || ||| |||| |||||||||||||    || |||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||  |    
T  24639080 gcaatcaatattgaatgtcatttggtttgcta----gtgggaaatatgaaaagaaagaaataacaggattttcaacggtaaagaatgctcgattatgtga 24639175  T
Q  193 t--tagtggacaaaattaaattactttccttcttgtgattgaa 233  Q
    |  ||||||||||||||||  |||||||||||| ||| |||||    
T  24639176 ttatagtggacaaaattaagctactttccttctcgtggttgaa 24639218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 18031922 - 18031787
Alignment:
Q  101 attttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtgg 199  Q
    |||||| |||| |||||||||||||| |||| | ||||||  |||||||||||||||| || |||||||| |||||||||||  ||  |||| |||||||    
T  18031922 attttgaatgtcatttggtttgctacagtgtggaaaatatagaaagaaagaaataacataattttcaacgctaaagaatgcttgatcttgcatttagtgg 18031823  T
Q  200 acaaaattaaattactttccttcttgtgattgaagg 235  Q
    ||||||| || |  |||||||||| ||| |||||||    
T  18031822 acaaaataaagtctctttccttctcgtggttgaagg 18031787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 11012353 - 11012475
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    ||||| |||||||| |||| | |||| || |||||||||||||||| || |||||||  |||||||||||||||||||   ||  |||||||||| || |    
T  11012353 atttgatttgctactgtgtggaaaatgtggaaagaaagaaataacatgattttcaacagtaaagaatgctcaattatgtgtttgatggacaaaataaagt 11012452  T
Q  212 tactttccttcttgtgattgaag 234  Q
    |||||||||||| ||| ||||||    
T  11012453 tactttccttctcgtggttgaag 11012475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 34520558 - 34520480
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag-aatttcaacgataaagaatgctcaattatgc 190  Q
    |||||||||||||||  || |||||||| |||||||||||||||||| | |||||| | |||||||||||| |||||||    
T  34520558 atttggtttgctaccacgtgggaaatataaaaagaaagaaataacagcattttcaaagttaaagaatgctcgattatgc 34520480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 34018186 - 34018062
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    |||||||| ||||| |||| ||||||||| || ||||||||||||| || ||| || | |||||| ||||| ||| |||  ||||||||||||||||| |    
T  34018186 atttggttcgctactgtgtgggaaatatggaaggaaagaaataacaggatttttaatggtaaagattgctcgattttgcgtttagtggacaaaattaagt 34018087  T
Q  212 tact-ttccttcttgtgattgaagg 235  Q
    ||||  ||||||| ||| |||||||    
T  34018086 tactaatccttctcgtggttgaagg 34018062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 32529081 - 32528958
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    ||||||||| |||  || ||||||||||| |||||||||||||||| || |||||| |||||||| ||||| |||||||   || |||||||||| || |    
T  32529081 atttggttttctatagtttaggaaatatggaaagaaagaaataacataattttcaaggataaagattgctcgattatgcgcataatggacaaaataaagt 32528982  T
Q  212 tactttccttcttgtgattgaagg 235  Q
      |||||||| | ||| |||||||    
T  32528981 ctctttccttttcgtggttgaagg 32528958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 19153508 - 19153386
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    |||||||||||||  |||| |||||| |  |||||||||||||||| || |||||||| |||||| ||||| | | |||  || ||||||||||| || |    
T  19153508 atttggtttgctatggtgtgggaaatttagaaagaaagaaataacaggattttcaacggtaaagagtgctcgactttgcgtttggtggacaaaataaagt 19153409  T
Q  212 tactttccttcttgtgattgaag 234  Q
    |||||||||| | ||| ||||||    
T  19153408 tactttccttttcgtggttgaag 19153386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 6360075 - 6359972
Alignment:
Q  133 ggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattactttccttcttgtgattg 231  Q
    |||||||||||||||||||||| | |||| ||||||  ||||||| ||||| |||||||   ||||||||||||| || |  |||||||| | ||| |||    
T  6360075 ggaaatatgaaaagaaagaaatgatagaattttcaagaataaagattgctcgattatgcgcatagtggacaaaataaagtctctttccttttcgtggttg 6359976  T
Q  232 aagg 235  Q
    ||||    
T  6359975 aagg 6359972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 22732778 - 22732644
Alignment:
Q  104 ttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacaga--atttcaacgataaagaatgctcaattatgcaattagtggac 201  Q
    |||||| | |||| |||||| || ||||  |||||||| |||||||||||||| |||  |||| || | |||||||||||  || ||||  ||||||||     
T  22732778 ttgcatctgatttcgtttgcaactgtgtgagaaatatggaaagaaagaaataatagaatatttaaatggtaaagaatgctggataatgcggttagtggat 22732679  T
Q  202 aaaattaaattactttccttcttgtgattgaaggc 236  Q
    ||| |||| | ||||||||||| ||| ||||||||    
T  22732678 aaagttaagtcactttccttctcgtggttgaaggc 22732644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 31454218 - 31454140
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgc 190  Q
    |||||| ||||||| || | ||||||||| |||||||||||||||| || |||||  |||||||| ||||| |||||||    
T  31454218 atttggcttgctacagtttgggaaatatggaaagaaagaaataacaggattttcatagataaagattgctcgattatgc 31454140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 17292946 - 17292898
Alignment:
Q  110 gttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca 158  Q
    |||||||||||||| ||||| | |||||| || ||||||||||||||||    
T  17292946 gttatttggtttgcaaccgtatgggaaatttggaaagaaagaaataaca 17292898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 19233288 - 19233477
Alignment:
Q  47 aatcatttcaatgagttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaag 146  Q
    |||||||| | | ||||||| | ||| ||||||||||||||| ||   |||||||| ||||||||| ||| ||||||||| ||||   ||||||| ||||    
T  19233288 aatcatttgattcagttcagttttggcggtggtggctctaagatgtgacaatctatcttgcatgtttttttgtttgctactgtgtgaaaaatatggaaag 19233387  T
Q  147 aaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattactttccttcttgtgattgaagg 235  Q
    ||| |||||| | || |||||||| |||||||||||| || |||  ||||||||| |||||||| ||||||||||||| ||| |||||||    
T  19233388 aaataaataatatgactttcaacggtaaagaatgctcgataatgtgattagtggataaaattaagttactttccttctcgtggttgaagg 19233477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 13136998 - 13137080
Alignment:
Q  110 gttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgca 191  Q
    |||||||||||||| |  |||| ||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||||||||    
T  13136998 gttatttggtttgcaagagtgtgggaaatatgaaaagaaagaaataacagaatttttaacgcaaaagaatgctcaattatgca 13137080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 40435066 - 40435159
Alignment:
Q  114 tttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaat 206  Q
    ||||||||||||   ||| |||||| || |||||||||||||||| || |||||| ||||||||| |||| ||||||||  | |||||||||||    
T  40435066 tttggtttgctattatgtgggaaatctggaaagaaagaaataacataattttcaatgataaagaaagctcgattatgcacattgtggacaaaat 40435159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 16584311 - 16584379
Alignment:
Q  90 tgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca 158  Q
    ||||||| |||||||||||| | ||||||| |||||| | ||   ||||||||||||||||||||||||    
T  16584311 tgcagcattctattttgcatctgatttggtatgctactgcgtgaaaaatatgaaaagaaagaaataaca 16584379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 4898927 - 4899021
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaat 206  Q
    ||||||||  ||||||| | ||||||||  |||||||||||||||| || |||||| || ||||| ||||| |||||||   |||||||||||||    
T  4898927 atttggttctctaccgtttgggaaatattgaaagaaagaaataacaaaattttcaaggacaaagattgctcgattatgcgtatagtggacaaaat 4899021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 13157352 - 13157446
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataac-agaatttcaacgataaagaatgctcaattatgcaattagtggacaaaat 206  Q
    ||||||||||| || |||| ||||||||| ||||||||||| ||| ||| ||| || |  |||||| |||||||||||||  | |||||||||||    
T  13157352 atttggtttgcaacagtgtgggaaatatggaaagaaagaaacaacaagatttttaatgcaaaagaaagctcaattatgcaggtggtggacaaaat 13157446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 10275328 - 10275523
Alignment:
Q  39 atgcaacaaatcatttcaatgagttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaat 138  Q
    |||||||| ||||||||| | ||||||| | |||  |||||||||||| | ||| |||||| |  ||||||||||| |||||| |||  || |  |||||    
T  10275328 atgcaacagatcatttcattcagttcagttttggctgtggtggctctagggtgcggcaatccaacttgcatgttatctggtttactattgtttgagaaat 10275427  T
Q  139 atgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattactttccttcttgtgattgaa 233  Q
    ||| |||||||||||||||| || |||||||  |||||||||||| || |||| ||||||||| ||||||||  |||||||||||| ||| |||||    
T  10275428 atggaaagaaagaaataacatgactttcaacagtaaagaatgctcgataatgcgattagtggataaaattaagctactttccttctcgtggttgaa 10275523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 37238030 - 37237869
Alignment:
Q  60 agttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag 159  Q
    ||||||||| |||  |||||| ||||||| ||| |||||||||||  ||| | |||||||||||||| |||| ||||||||| |||||||||||||||||    
T  37238030 agttcagctatggcagtggtgactctaaggtgcggcaatctatttatcatttgatttggtttgctactgtgtgggaaatatgtaaagaaagaaataacag 37237931  T
Q  160 aat-ttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattactttcct 220  Q
     || ||||| | |||||| ||||| || | ||  ||||||||||||||||| || |||||||    
T  37237930 tatcttcaatggtaaagagtgctcgataacgctgttagtggacaaaattaagttgctttcct 37237869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 16559982 - 16560058
Alignment:
Q  83 tctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag 159  Q
    |||||| ||| |||||||||| ||||| | |||||||||||||| |||| ||||||||| |||||||||||||||||    
T  16559982 tctaaggtgcggcaatctattatgcatctcatttggtttgctacggtgtgggaaatatggaaagaaagaaataacag 16560058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 16605680 - 16605604
Alignment:
Q  83 tctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag 159  Q
    |||||| ||| |||||||||| ||||| | |||||||||||||| |||| ||||||||| |||||||||||||||||    
T  16605680 tctaaggtgcggcaatctattatgcatctcatttggtttgctacggtgtgggaaatatggaaagaaagaaataacag 16605604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 14315588 - 14315524
Alignment:
Q  95 caatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag 159  Q
    ||||||||||||||| | |||||||||||||| | || |||||| || || ||||||||||||||    
T  14315588 caatctattttgcatctgatttggtttgctactgcgtgggaaatttggaaggaaagaaataacag 14315524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 24286338 - 24286460
Alignment:
Q  114 tttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaatt 212  Q
    |||||||||||||  | | ||||||||| |||||||||||||| |||| |||||| |  ||||||||||  ||||||| | ||||||| ||||| || |     
T  24286338 tttggtttgctactctttgggaaatatggaaagaaagaaataatagaattttcaaggtcaaagaatgcttgattatgcgaatagtggataaaataaagtc 24286437  T
Q  213 actttccttcttgtgattgaagg 235  Q
     |||||||| | ||| |||||||    
T  24286438 tctttccttttcgtggttgaagg 24286460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 51800428 - 51800579
Alignment:
Q  70 tggtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaac 168  Q
    |||||||||||| |||||| ||||  ||||||||||  || | |||||||||||||  |||| ||||||||| |||||||||||||||| || ||||||     
T  51800428 tggtggtggtggttctaaggtgcaataatctattttatatctcatttggtttgctatagtgtgggaaatatggaaagaaagaaataacaggattttcaat 51800527  T
Q  169 gataaagaatgctcaattatgcaattagtggacaaaattaaattactttcct 220  Q
    |||||||| ||||| ||  |||  ||||||||||||||||| || |||||||    
T  51800528 gataaagagtgctcgatattgctgttagtggacaaaattaagttgctttcct 51800579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 9484701 - 9484890
Alignment:
Q  48 atcatttcaatgagttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaaga 147  Q
    ||||||| ||| ||||||||| ||| ||||||||||||||   || |||||| ||| |  || | |||||||||||||  |||| |||||| ||||||||    
T  9484701 atcattttaatcagttcagctatggcggtggtggctctaactggcggcaatcaattatttatctgatttggtttgctagtgtgtgggaaatttgaaaaga 9484800  T
Q  148 aagaaataac-agaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattactttccttcttgtgattgaaggc 236  Q
    |||||||||| |||  ||||| | ||||||||| || ||  ||||| |||| || || ||||| | | ||||||||||||| ||||||||    
T  9484801 aagaaataacaagatattcaatggtaaagaatgttcgatattgcaaatagtagataagattaagtcaatttccttcttgtggttgaaggc 9484890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 3926766 - 3926643
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    |||||||||| ||  |||| |||||| || ||||||||||||||||||| |||||| | |||||| ||||| ||| |||  | |||||||||||||||      
T  3926766 atttggtttgttaatgtgtgggaaatttggaaagaaagaaataacagaattttcaatggtaaagagtgctcgattttgcgttgagtggacaaaattaagc 3926667  T
Q  212 tactttccttcttgtgattgaagg 235  Q
    |||||||||||| ||| |||||||    
T  3926666 tactttccttctcgtggttgaagg 3926643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 27099765 - 27099670
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataac-agaatttcaacgataaagaatgctcaattatgcaattagtggacaaaatt 207  Q
    |||||||||||||| |||| | ||||||| ||||||||||||||| ||| |||||| | |||||| ||||| ||| ||| ||||||||||||||||    
T  27099765 atttggtttgctactgtgtggaaaatatggaaagaaagaaataacaagattttcaatgctaaagattgctcgattttgcgattagtggacaaaatt 27099670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 33134295 - 33134418
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    |||||||||||||| || | ||||||||| |||||||||||||| |||| |||||| |  ||||||||||| ||||||| | ||||||||||||| || |    
T  33134295 atttggtttgctactgtttgggaaatatggaaagaaagaaataatagaattttcaaggtcaaagaatgctcgattatgcgaatagtggacaaaataaagt 33134394  T
Q  212 tactttccttcttgtgattgaagg 235  Q
      |||||||| | ||| |||||||    
T  33134395 ctctttccttttcgtggttgaagg 33134418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 44889249 - 44889126
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    |||||||||||||| || | ||||||||| ||||||||||||||||||| |||||| |  ||||||||||| ||||||| | || |||||||||| || |    
T  44889249 atttggtttgctactgtttgggaaatatggaaagaaagaaataacagaattttcaaggtcaaagaatgctcgattatgcgaataatggacaaaataaagt 44889150  T
Q  212 tactttccttcttgtgattgaagg 235  Q
      |||||||| | ||| |||||||    
T  44889149 ctctttccttttcgtggttgaagg 44889126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 8397933 - 8397854
Alignment:
Q  74 ggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaa 153  Q
    |||||||| |||||| ||| ||||||||| |||||| | |||||||||||||| |||| ||||||||| ||| |||||||    
T  8397933 ggtggtggttctaaggtgcggcaatctatcttgcatttgatttggtttgctactgtgtgggaaatatggaaataaagaaa 8397854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 46271928 - 46272027
Alignment:
Q  108 atgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaattt-caacgataaagaatgctcaattatgcaattagtggacaaaat 206  Q
    |||| |||||||||||||| |||| |||||| || |||||||||||||||| ||||| ||| |||||| || ||||||||||||   | |||||||||||    
T  46271928 atgtcatttggtttgctactgtgtgggaaatctggaaagaaagaaataacaaaattttcaaagataaacaaagctcaattatgcggattgtggacaaaat 46272027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 48611012 - 48610929
Alignment:
Q  81 gctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaattt 164  Q
    |||||||| |||  ||||||||||||||| | ||||||| |||||| |||  ||||||||| ||||||||||||| ||||||||    
T  48611012 gctctaaggtgcgacaatctattttgcatttgatttggtatgctactgtgggggaaatatggaaagaaagaaatagcagaattt 48610929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 40708622 - 40708576
Alignment:
Q  112 tatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca 158  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  40708622 tatttggtttgcaaccgtgtaggaaatttgaaaagaaagaaataaca 40708576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 42450820 - 42450708
Alignment:
Q  98 tctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattag 196  Q
    |||||||| || ||||||| |||||| || || | | ||||||| |||||||||||||| |||| |||||| |  ||||||||||||||||||||  | |    
T  42450820 tctattttacaggttatttagtttgcaacagtatggaaaatatggaaagaaagaaataatagaactttcaatgcgaaagaatgctcaattatgcaggttg 42450721  T
Q  197 tggacaaaattaa 209  Q
    |||| ||||||||    
T  42450720 tggataaaattaa 42450708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 10252146 - 10252195
Alignment:
Q  115 ttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaattt 164  Q
    |||||||||||| |||| | |||| || ||||||||||||||||||||||    
T  10252146 ttggtttgctactgtgtggaaaatctggaaagaaagaaataacagaattt 10252195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 25529965 - 25530009
Alignment:
Q  114 tttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca 158  Q
    |||||||||||||||||| |||||| || ||||||||||| ||||    
T  25529965 tttggtttgctaccgtgtgggaaatttggaaagaaagaaacaaca 25530009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 9583600 - 9583489
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||| || |||||| | |||||| ||||| ||| ||| ||||||||||||||||||      
T  9583600 atttggtttgctactgtgtgggaaatataaaaagaaagaaataacaggattttcaatggtaaagattgctcgattttgcgattagtggacaaaattaagc 9583501  T
Q  212 tactttccttct 223  Q
    | ||||||||||    
T  9583500 tcctttccttct 9583489  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 13880556 - 13880743
Alignment:
Q  23 tcggtcctcccgttatatgcaacaaatcatttcaatgagttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttg 122  Q
    ||||||||||| |  | ||||||| | || || ||| |||||| || ||| ||||||||||||||| ||| |||||||||||||||| | |||||||||     
T  13880556 tcggtcctcccatattgtgcaacagagcactttaatcagttcaactatggcggtggtggctctaaggtgcggcaatctattttgcatttgatttggttta 13880655  T
Q  123 ctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaa 209  Q
    |||| |||| | ||||||| ||||||| |||| ||| ||  ||||| | |||||| |||||||| | ||  |||||||||||||||||    
T  13880656 ctactgtgtggaaaatatggaaagaaaaaaatgacatgatcttcaatggtaaagagtgctcaataacgctgttagtggacaaaattaa 13880743  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 14020681 - 14020868
Alignment:
Q  23 tcggtcctcccgttatatgcaacaaatcatttcaatgagttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttg 122  Q
    ||||||||||| |  | ||||||| | || || ||| |||||| || ||| ||||||||||||||| ||| |||||||||||||||| | |||||||||     
T  14020681 tcggtcctcccatattgtgcaacagagcactttaatcagttcaactatggcggtggtggctctaaggtgcggcaatctattttgcatttgatttggttta 14020780  T
Q  123 ctaccgtgtaggaaatatgaaaagaaagaaataaca-gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaa 209  Q
    |||| |||| | ||||||| ||||||| |||| ||| ||  ||||| | |||||| |||||||| | ||  |||||||||||||||||    
T  14020781 ctactgtgtggaaaatatggaaagaaaaaaatgacatgatcttcaatggtaaagagtgctcaataacgctgttagtggacaaaattaa 14020868  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 18948701 - 18948813
Alignment:
Q  98 tctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattag 196  Q
    |||||||| || ||||||| |||||| || || | ||||||||| |||||||||||||| |||| ||| || |  ||||||||||||||||||||  | |    
T  18948701 tctattttacaggttatttagtttgcaacggtatgggaaatatggaaagaaagaaataatagaacttttaatgcgaaagaatgctcaattatgcaggttg 18948800  T
Q  197 tggacaaaattaa 209  Q
    |||||||||||||    
T  18948801 tggacaaaattaa 18948813  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 5589526 - 5589620
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaat 206  Q
    |||||||||||||| || | ||||| ||| |||||||||||||||| || |||||| | ||||||||| || ||||||| | |||||||||||||    
T  5589526 atttggtttgctactgtttgggaaagatggaaagaaagaaataacaaaattttcaaggttaaagaatgttcgattatgcgaatagtggacaaaat 5589620  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 38408905 - 38409005
Alignment:
Q  110 gttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaatttc-aacgataaagaatgctcaattatgcaattagtggacaaaatta 208  Q
    |||||||||||||| |  ||||  |||||||||| |||||||||||||| |||||  || |  ||||||||||||||||||||| | |||||||| ||||    
T  38408905 gttatttggtttgcaatagtgtgagaaatatgaacagaaagaaataacataatttttaatgcaaaagaatgctcaattatgcaagtggtggacaagatta 38409004  T
Q  209 a 209  Q
    |    
T  38409005 a 38409005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 32151439 - 32151603
Alignment:
Q  60 agttcagctctggtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataac-a 158  Q
    ||||||| | ||||||||| ||  || || |||| ||||| |||||   ||| |||| ||||| ||| |||| |||||| || ||||||||||||||| |    
T  32151439 agttcagttttggtggtgggggaactcaggtgcaacaatcaattttaactgtcatttcgtttggtactgtgtgggaaatgtggaaagaaagaaataacaa 32151538  T
Q  159 gaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattactttccttct 223  Q
    || |||||||  |||||||||||| ||| ||   || ||||||||||| ||  ||||||||||||    
T  32151539 gattttcaacagtaaagaatgctcgattttgtgtttggtggacaaaataaagctactttccttct 32151603  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 39117321 - 39117385
Alignment:
Q  95 caatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag 159  Q
    ||||| ||||| || |||||||||| ||||||  ||| |||||| || |||||||||||||||||    
T  39117321 caatcaattttacaggttatttggtatgctactatgtgggaaatctggaaagaaagaaataacag 39117385  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 42105685 - 42105803
Alignment:
Q  116 tggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaatttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaattact 215  Q
    ||||||||||||||||  ||||| |||||||||||||||||||  || | || | |||||| ||| |||||||||  ||| ||||||||||||| |||||    
T  42105685 tggtttgctaccgtgtgagaaatttgaaaagaaagaaataacatgatcttaatggtaaagagtgcccaattatgcgtttaatggacaaaattaagttact 42105784  T
Q  216 ttccttcttgtgattgaag 234  Q
    ||| |||| ||| ||||||    
T  42105785 ttctttctcgtggttgaag 42105803  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 31050552 - 31050639
Alignment:
Q  72 gtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag 159  Q
    ||||||||| ||||||| ||| ||||||||| |||||| | |||||||||||||| |||| |||||  || |||||||||||||||||    
T  31050552 gtggtggtgactctaagatgcggcaatctatcttgcatttgatttggtttgctactgtgtgggaaacctggaaagaaagaaataacag 31050639  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 44781836 - 44781768
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgc 180  Q
    |||||||||||||| |||| |||||| || ||||||||||||||||||| |||||| || |||||||||    
T  44781836 atttggtttgctactgtgtgggaaatttggaaagaaagaaataacagaattttcaatgacaaagaatgc 44781768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 25408683 - 25408762
Alignment:
Q  110 gttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaatttcaacgataaagaatgctcaattatg 189  Q
    |||||||||||||| ||||||| |||||| || ||||||||||||||||  |||| || || || |||||| ||||||||    
T  25408683 gttatttggtttgcaaccgtgtgggaaatctggaaagaaagaaataacaacattttaatgaaaaggaatgcacaattatg 25408762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 39770793 - 39770940
Alignment:
Q  74 ggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaat-ttcaacgata 172  Q
    ||||||||||||||| ||| ||||||||| | || | | |||||||||||||  |||| |||||| || ||||||| ||||||||| || ||||| | ||    
T  39770793 ggtggtggctctaaggtgcggcaatctatctcgcttttgatttggtttgctattgtgtgggaaatttggaaagaaataaataacaggatcttcaatggta 39770892  T
Q  173 aagaatgctcaattatgcaattagtggacaaaattaaattactttcct 220  Q
    |||| ||||| || | |   ||||| ||||||||||| || |||||||    
T  39770893 aagagtgctcgataacgatgttagtcgacaaaattaagttgctttcct 39770940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 43695703 - 43695826
Alignment:
Q  113 atttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgataaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    |||||||||||||| ||||| |||||||| | ||||||||||| || || ||||||   |||||||||||| |||  ||  |||||||||||||| || |    
T  43695703 atttggtttgctacggtgtatgaaatatggagagaaagaaatagcataattttcaatactaaagaatgctcgatttcgcgtttagtggacaaaataaagt 43695802  T
Q  212 tactttccttcttgtgattgaagg 235  Q
      |||||||||| ||| |||||||    
T  43695803 ctctttccttctcgtggttgaagg 43695826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 35503817 - 35503899
Alignment:
Q  82 ctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaattt 164  Q
    ||||||| ||| |||| | ||| ||||| | |||||||||||||| || | ||||||||| ||||||||||||||||| ||||    
T  35503817 ctctaaggtgcggcaagcgattatgcatttaatttggtttgctactgtttgggaaatatggaaagaaagaaataacaggattt 35503899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 51346422 - 51346358
Alignment:
Q  95 caatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacag 159  Q
    ||||||||||||||| ||||||||| |||||| | ||  |||||||| |||||||||| ||||||    
T  51346422 caatctattttgcatcttatttggtatgctactgcgtgagaaatatggaaagaaagaattaacag 51346358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 11453062 - 11452976
Alignment:
Q  72 gtggtggtggctctaagctgcagcaatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataaca 158  Q
    ||||||| | ||||||| ||| ||||| ||| |||||| | |||||||||||||  |||| | |||| || ||||||||||||||||    
T  11453062 gtggtggagactctaagatgcggcaatttatcttgcatttgatttggtttgctagtgtgtggaaaatctggaaagaaagaaataaca 11452976  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 1590291 - 1590413
Alignment:
Q  114 tttggtttgctaccgtgtaggaaatatgaaaagaaagaaataacagaa-tttcaacgat-aaagaatgctcaattatgcaattagtggacaaaattaaat 211  Q
    ||||||||||||| || | ||||||||| ||| ||||||||||||||| |||||| ||| ||||||||||| ||||||| | ||||||||||||| || |    
T  1590291 tttggtttgctactgtttgggaaatatggaaaaaaagaaataacagaagtttcaa-gatcaaagaatgctcgattatgcgaatagtggacaaaataaagt 1590389  T
Q  212 tactttccttcttgtgattgaagg 235  Q
      |||||||| | ||| |||||||    
T  1590390 ctctttccttttcgtggttgaagg 1590413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 459282 - 459222
Alignment:
Q  95 caatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaata 155  Q
    ||||||||| ||||| | ||||||| |||||| | || |||||||||||||||| ||||||    
T  459282 caatctattatgcatctgatttggtatgctactgcgtgggaaatatgaaaagaaggaaata 459222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 147 - 208
Alignment:
Q  95 caatctattttgcatgttatttggtttgctaccgtgtaggaaatatgaaaagaaagaaataa 156  Q
    ||||||||| ||||| | |||||||||||||| ||||  |||||||| ||||||||||||||    
T  147 caatctattatgcatctcatttggtttgctacggtgtgagaaatatggaaagaaagaaataa 208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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