View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_low_17 (Length: 236)
Name: NF5709_low_17
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1893248 - 1893470
Alignment:
| Q |
1 |
gatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaaaatgttacgcaacacac |
100 |
Q |
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| T |
1893248 |
gatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattcacatatctcacggaaaatgttacgcaacacac |
1893347 |
T |
|
| Q |
101 |
ctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataaggatgttgtgatgcatcc |
200 |
Q |
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| T |
1893348 |
ctatactacc-atcaacatatttctactaattttttcacaaaaattatattcatgagaaaaagataaaggatatggaaataaggatgttgtgatgcatcc |
1893446 |
T |
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| Q |
201 |
attcaatgacctatatacaatatg |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
1893447 |
attcaatgacctatatacagtatg |
1893470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1902694 - 1902916
Alignment:
| Q |
1 |
gatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaaaatgttacgcaacacac |
100 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
1902694 |
gatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattcacatatctcacggaaaatgttacgcaacacac |
1902793 |
T |
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| Q |
101 |
ctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataaggatgttgtgatgcatcc |
200 |
Q |
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| T |
1902794 |
ctatactacc-atcaacatatttctactaattttttcacaaaaattatattcatgagaaaaagataaaggatatggaaataaggatgttgtgatgcatcc |
1902892 |
T |
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| Q |
201 |
attcaatgacctatatacaatatg |
224 |
Q |
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| T |
1902893 |
attcaatgacctatatacagtatg |
1902916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2935150 - 2934946
Alignment:
| Q |
1 |
gatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaaaatgttacgcaacacac |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2935150 |
gatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattcacatatctcatggaaaatgttacgcaacacac |
2935051 |
T |
|
| Q |
101 |
ctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataaggatgttgtgatgcatcc |
200 |
Q |
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| T |
2935050 |
ctaatcca-ccatcaacatatttctactaatt------------------tcgtgagaaaaagataacggatatggaaataaggatgttgtgatgcatcc |
2934970 |
T |
|
| Q |
201 |
attcaatgacctatatacaatatg |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
2934969 |
attcaatgacctatatacagtatg |
2934946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1900160 - 1900359
Alignment:
| Q |
1 |
gatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaaaatgttacgcaacacac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| || || |
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| T |
1900160 |
gatacaatacaaggttaaaattctgaactgaaataacattcaagtt-cggagttttgaaaaaatattcatatatctcatggaaaatgttacgc--caaac |
1900256 |
T |
|
| Q |
101 |
ctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataaggatgttgtgatgcatcc |
200 |
Q |
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| T |
1900257 |
ataatcca-ccatcaacatatttctact--------------aattatattcatgagaaaaagataaaagacacggaaataaggatattgtgatgcatcc |
1900341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1909606 - 1909805
Alignment:
| Q |
1 |
gatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaaaatgttacgcaacacac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| || || |
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| T |
1909606 |
gatacaatacaaggttaaaattctgaactgaaataacattcaagtt-cggagttttgaaaaaatattcatatatctcatggaaaatgttacgc--caaac |
1909702 |
T |
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| Q |
101 |
ctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataaggatgttgtgatgcatcc |
200 |
Q |
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||||||| ||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1909703 |
ataatcca-ccatcaacatatttctact--------------aattatattcatgagaaaaagataaaagacacggaaataaggatattgtgatgcatcc |
1909787 |
T |
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