View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_low_3 (Length: 550)
Name: NF5709_low_3
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 66 - 331
Target Start/End: Original strand, 56377293 - 56377546
Alignment:
| Q |
66 |
atgtcccaacacctcacctctataagcttaagttctttgtttagtgcttccactcactcactcactaccaaaaactcatctcttctcttctctttcttta |
165 |
Q |
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| T |
56377293 |
atgtcccaacacctcacctctataagcttaagttctttgtttagtgcttccactcactcact----accaaaaactcatctc-----ttctctttcttta |
56377383 |
T |
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| Q |
166 |
ttgcctagctagttactctaatgttattatcctgtcataacataatataataataagcatggaaacttgtatttgatgtatcttcacttcacttcttctc |
265 |
Q |
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| T |
56377384 |
ttgactagctagttactctaatgttattatcctgtcataacataatataataataagcatggaaacttgtatttgatgtatcttcacttcacttcttctc |
56377483 |
T |
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| Q |
266 |
caattcatcaattcttcttctgtatgtggctgactacttgattctcaattaattagctaaaccaac |
331 |
Q |
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| T |
56377484 |
caattcatcaa---ttcttctgcatgtggctgactacttcattctcaattaattagctaaaccaac |
56377546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 403 - 539
Target Start/End: Original strand, 56377613 - 56377746
Alignment:
| Q |
403 |
gaggagagatataacacccagggtgggaaagtgtcttgtatgcttataaagttgtcttctcatcattaccatatgtttctgcagtagtgcatgccctact |
502 |
Q |
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| T |
56377613 |
gaggagagatataacacccagggtgggaaagtgtcttgtatgcttataaagttgtcttctcatcattaccatatgtttctgc---agtggatgccctact |
56377709 |
T |
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| Q |
503 |
aattaattgcttgcttgcaattcttgatccctttcat |
539 |
Q |
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| T |
56377710 |
aattaattacttgcttgcaattcttgatccctttcat |
56377746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 56377234 - 56377268
Alignment:
| Q |
23 |
cttcctctttgtctgttaaaatctgctttttctcc |
57 |
Q |
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| T |
56377234 |
cttcctctttgtctgttaaaatctgctttttctcc |
56377268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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