View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_low_4 (Length: 397)
Name: NF5709_low_4
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 49374327 - 49373950
Alignment:
| Q |
1 |
atctctgagcattcatctttcttccatgattatcgtcgatagcactttaccctacgacaaacttccttcccaaaatctccctctcactgtcctcaaattg |
100 |
Q |
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| T |
49374327 |
atctctgagcattcaactttcttccatgattatcgtcgattgcactttaccctacgacaaacttccttcccaaaatctcactctcactgtcctcaaattg |
49374228 |
T |
|
| Q |
101 |
gattcttcttccttccataatttgcctctactcgccgatttttcttcaaattcctacagtgtactgttgcatttctttgatcttgaattcatatgcaaga |
200 |
Q |
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| T |
49374227 |
gattcttcttccttccgtaatttgcctctactcgccgatttttcttcaaattcctacagtgtactgttgcatttctttgatcttgaattcatatgcaaga |
49374128 |
T |
|
| Q |
201 |
ttttaattgtttcagaggttgaagttgcgaaaaccgcaactgttgcagtcctgaagcaggtagtggaggctgcttttagacacaaaccggagaaaatatc |
300 |
Q |
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| T |
49374127 |
ttttaattgtttcagaggttgaagttgcgaaaaccgcaactgttgcagtcctgaagcaggcagtggaggctgcttttagacacaaaccggagaaaatatc |
49374028 |
T |
|
| Q |
301 |
ctggtgcgttgttaatttcaccaattttcattttagaaagttttttcgttgttaattttgataatcttgtgtagatct |
378 |
Q |
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| T |
49374027 |
ctggtgcgttgttaatttcaccaattttcattatagaaagttttttcgttgttaatgttgataatcttgtgtagatct |
49373950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 122 - 378
Target Start/End: Complemental strand, 14245848 - 14245609
Alignment:
| Q |
122 |
ttgcctctactcgccgatttttcttcaaattcctacagtgtactgttgcatttctttgatcttgaattcatatgcaagattttaattgtttcagaggttg |
221 |
Q |
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||||||||||||| |||||||| || |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| | |
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| T |
14245848 |
ttgcctctactcgtcgatttttgtttaaattcctacggtgcactgttgcatttctttgatcttgagttcatatgcaagatttgaattgtttcata----- |
14245754 |
T |
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| Q |
222 |
aagttgcgaaaaccgcaactgttgcagtcctgaagcaggtagtggaggctgcttttagacacaaaccggagaaaatatcctggtgc-gttgttaatttca |
320 |
Q |
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|||||| ||||||| || ||| ||| ||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
14245753 |
-------------tgcaactattgcagtactcaagtaggcagtggagattgcttttagacataaaccggagaaaatatcctagtgcttttgttaatttca |
14245667 |
T |
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| Q |
321 |
ccaattttcattttagaaagttt-tttcgttgttaattttgataatcttgtgtagatct |
378 |
Q |
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|||||||| |||||||||||||| ||| | |||||||||||| ||| ||||| |||||| |
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| T |
14245666 |
ccaatttttattttagaaagtttatttggatgttaattttgaaaat-ttgtgaagatct |
14245609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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