View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5709_low_6 (Length: 356)
Name: NF5709_low_6
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 26410427 - 26410753
Alignment:
| Q |
12 |
tcatcaaaacagaacacaaccatcccttaatcccaccaaaaacaaacctctcaaacaatctaccacctcttcaaaccctaacaataaccataacaaaccc |
111 |
Q |
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| T |
26410427 |
tcatcaaaacagaacacaaccatcccttaatcccaccaaaaacaaacctctcaaacaatctaccacctcttcaaaccctaacaataaccataacaaaccc |
26410526 |
T |
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| Q |
112 |
aaacacagaactaaaccacgccaccgacgaatcctacacgttaataatcacaactcccaccgccaccttaaccgccgtaacttcatggggagccatgcat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26410527 |
aaacacagaactaaaccacgccaccgacgaatcctacacgttaataatcacaactcccaccgccaccttaaccgctgtaacttcatggggagccatgcat |
26410626 |
T |
|
| Q |
212 |
ggtttagaaacattctcacagcttgcatggggaaacccaacgcgcgtagctgtgaacgtgcgtgttaacgacgcgccgttgttcggtcatcgcggtatca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26410627 |
ggtttagaaacattctcacagcttgcatggggaaacccaacgcgcgtggctgtgaacgtgcgtgttaacgacgcgccgttgttcggtcatcgcggtatta |
26410726 |
T |
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| Q |
312 |
tgttagatacttcaagaaactactatc |
338 |
Q |
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||||||||||||||||||||||||||| |
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| T |
26410727 |
tgttagatacttcaagaaactactatc |
26410753 |
T |
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