View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5709_low_7 (Length: 340)
Name: NF5709_low_7
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_7 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 296
Target Start/End: Original strand, 28385230 - 28385524
Alignment:
| Q |
2 |
tcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggactgttgttatcaatttctcattgct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28385230 |
tcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaattcttcggactgttgttatcaatttctcattgct |
28385329 |
T |
|
| Q |
102 |
gaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28385330 |
gaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcctctacaattgagttccctccgcaatgtgtcagaaatccccccacc |
28385429 |
T |
|
| Q |
202 |
gcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatcccttcggcagcca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
28385430 |
gcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctttggcagcca |
28385524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 12540583 - 12540871
Alignment:
| Q |
4 |
accaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggactgttgttatcaatttctcattgctga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| |||||| |||||| | |||||| ||| | |
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|
| T |
12540583 |
accaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaata |
12540682 |
T |
|
| Q |
104 |
agtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgc |
203 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||| |
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|
| T |
12540683 |
agtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgc |
12540782 |
T |
|
| Q |
204 |
agggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatcccttcggca |
292 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
12540783 |
agggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggca |
12540871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 3417810 - 3417520
Alignment:
| Q |
2 |
tcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggactgttgttatcaatttctcattgct |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || |||||| || ||||||||||||||||||||| ||||||| |||||| | |||||||||| |
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|
| T |
3417810 |
tcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggacttgtgttattagtttctcattgaa |
3417711 |
T |
|
| Q |
102 |
gaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccacc |
201 |
Q |
| |
|
|| |||||| |||||| ||||||||||||||||||||||| || |||||||| || |||| |||||||||||| |||||||||| ||||||||| ||| |
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|
| T |
3417710 |
caattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctacc |
3417611 |
T |
|
| Q |
202 |
gcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatcccttcggca |
292 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3417610 |
gcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggca |
3417520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 13448259 - 13448547
Alignment:
| Q |
2 |
tcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggactgttgttatcaatttctcattgct |
101 |
Q |
| |
|
|||| ||||||||||||||| | |||| | ||||||||||| || |||| ||||| |||||||||| ||||| | |||||||| |||||||||| |
|
|
| T |
13448259 |
tcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttatcagtttctcattgta |
13448358 |
T |
|
| Q |
102 |
gaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccacc |
201 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
13448359 |
gaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccact |
13448458 |
T |
|
| Q |
202 |
gcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatcccttcgg |
290 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||||||||| || || ||||||||||| || || |||||||| |||||||||||||| |
|
|
| T |
13448459 |
gcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcgg |
13448547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 13440096 - 13440386
Alignment:
| Q |
2 |
tcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggactgttgttatcaatttctcattgct |
101 |
Q |
| |
|
|||||||||||| ||||||| || |||||| ||||||||||||| |||| |||||||||||||||| ||| | | ||||| || |||||| ||| |
|
|
| T |
13440096 |
tcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattgtgttaccagtttctcgttgta |
13440195 |
T |
|
| Q |
102 |
gaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccacc |
201 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
13440196 |
gaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataaatccccccacc |
13440295 |
T |
|
| Q |
202 |
gcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatcccttcggca |
292 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| | || || |||||| || | | |||||||||||| || |||||||| |||| |
|
|
| T |
13440296 |
gcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggca |
13440386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 13454730 - 13455020
Alignment:
| Q |
2 |
tcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggactgttgttatcaatttctcattgct |
101 |
Q |
| |
|
|||||||||||| ||||||| || |||| ||||||||||||| || |||| ||||| | |||||||| ||| ||| |||||| | |||||| ||| |
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|
| T |
13454730 |
tcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgta |
13454829 |
T |
|
| Q |
102 |
gaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccacc |
201 |
Q |
| |
|
||| |||||| |||| |||||||||||||||||||||||| || |||||| ||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
13454830 |
gaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccact |
13454929 |
T |
|
| Q |
202 |
gcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatcccttcggca |
292 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| || || |||||||| || | |||||| |||| |||||||||||||||| |
|
|
| T |
13454930 |
gcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggca |
13455020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 292
Target Start/End: Original strand, 48958159 - 48958333
Alignment:
| Q |
121 |
ggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatca |
220 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||| || ||| | ||||||| |||||||||||||| |||| | ||||| ||| || ||||| |||| |
|
|
| T |
48958159 |
ggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatca |
48958258 |
T |
|
| Q |
221 |
gaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatcccttcggca |
292 |
Q |
| |
|
||||||||||||||| ||||| || || ||||| ||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
48958259 |
aaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggca |
48958333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 287
Target Start/End: Original strand, 48965259 - 48965510
Alignment:
| Q |
36 |
acaccattccgtaacacctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcatt |
135 |
Q |
| |
|
||||||||| || |||| |||||||||||||| | ||| ||| |||||||| ||| || ||| ||| || ||| |||| ||||||| || ||||| |
|
|
| T |
48965259 |
acaccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatc |
48965358 |
T |
|
| Q |
136 |
ggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggccc |
235 |
Q |
| |
|
||||| ||||| |||||||| || || | ||||||| || ||||| |||| ||| | ||||| || |||| ||||| |||||||| || || |||| |
|
|
| T |
48965359 |
ggaacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagccc |
48965458 |
T |
|
| Q |
236 |
aacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt |
287 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||| || |||||||| |
|
|
| T |
48965459 |
aacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt |
48965510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 48961353 - 48961482
Alignment:
| Q |
166 |
gagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctt---tc |
262 |
Q |
| |
|
||||||| ||||||||| |||| ||| | |||||||| | || || || |||| ||||||||||||||| ||| | || || ||||||||||| | |
|
|
| T |
48961353 |
gagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttctttt |
48961452 |
T |
|
| Q |
263 |
caatgtttctctcctcaaatcccttcggca |
292 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |
|
|
| T |
48961453 |
caatgtttctctcttcaaatcctttcggca |
48961482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 12483556 - 12483454
Alignment:
| Q |
196 |
cccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctt------tccaatgtttctctcctcaaatcccttcg |
289 |
Q |
| |
|
||||| ||||||| |||||| ||||| || ||||| ||||| |||||||| || |||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
12483556 |
cccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatcttattccttctaatgtttctctcctcaaatcccttcg |
12483457 |
T |
|
| Q |
290 |
gca |
292 |
Q |
| |
|
||| |
|
|
| T |
12483456 |
gca |
12483454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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