View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5709_low_8 (Length: 332)
Name: NF5709_low_8
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5709_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 4365484 - 4365314
Alignment:
| Q |
18 |
aattgaaggatagttttgcagaaattttttgtttggtactgttatagtattctatatatagttttatgttttatacctttctataaggtattgaatgata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4365484 |
aattgaaggatagttttgcagaaattttttgtttggtactgttatagtattctatatatagttttatgttttatacctttctataaggtattcaatgata |
4365385 |
T |
|
| Q |
118 |
gatatgattgtctaaatgtaaattctatgtgaatttggacggctttgtccttttatgtattgaattgtata |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4365384 |
gatatgattgtctaaatgtaaattctatgtgaatttggacggctttgtccttttatgtattgaattatata |
4365314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 4365321 - 4365272
Alignment:
| Q |
272 |
attatatagcttattatccttattataagtgagaatatatggtccttcat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4365321 |
attatatagcttattatccttattataagtgagaatatatggtccttcat |
4365272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 33652296 - 33652116
Alignment:
| Q |
128 |
tctaaatgtaaattctatgtgaatttggacggct-----ttgtccttttatgtattgaattgtataagctatattagtgaaatgttaaagtttattagtt |
222 |
Q |
| |
|
||||||| |||||||||||||||||| || ||| ||||||||||| |||| |||||||||||| | || |||||| |||||| ||||||||| |
|
|
| T |
33652296 |
tctaaatataaattctatgtgaatttagaatgctttgtcttgtccttttaagtatcgaattgtataagttcatgtaatgaaatattaaaggttattagtt |
33652197 |
T |
|
| Q |
223 |
gaaattgaggattaaaggcataccttgcatatgaatgtttcttatg--tatattatatagcttattatccttattataagt |
301 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||| | |||||||||| |
|
|
| T |
33652196 |
gaaattgaggattaaagacataccttgcgtatgaatgtttcttatgtatatattatatagtatattatacatattataagt |
33652116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University