View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5709_low_9 (Length: 326)

Name: NF5709_low_9
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5709_low_9
NF5709_low_9
[»] chr8 (8 HSPs)
chr8 (102-325)||(26509286-26509509)
chr8 (1-76)||(21467483-21467557)
chr8 (20-76)||(26509535-26509591)
chr8 (1-74)||(13592860-13592933)
chr8 (1-62)||(23262824-23262885)
chr8 (1-48)||(45108610-45108657)
chr8 (1-48)||(26629004-26629051)
chr8 (102-140)||(30170725-30170765)
[»] chr4 (6 HSPs)
chr4 (1-76)||(13140198-13140273)
chr4 (102-140)||(40293275-40293313)
chr4 (19-76)||(40293337-40293394)
chr4 (1-63)||(10376141-10376203)
chr4 (102-140)||(13140299-13140337)
chr4 (28-76)||(29963707-29963755)
[»] chr7 (2 HSPs)
chr7 (1-76)||(11813446-11813521)
chr7 (1-75)||(34820698-34820772)
[»] chr2 (6 HSPs)
chr2 (3-76)||(31415112-31415185)
chr2 (1-76)||(18423659-18423733)
chr2 (102-140)||(28481816-28481854)
chr2 (102-140)||(31227548-31227586)
chr2 (1-75)||(34432392-34432466)
chr2 (102-140)||(29472027-29472067)
[»] chr5 (3 HSPs)
chr5 (1-76)||(30838260-30838335)
chr5 (1-76)||(14062730-14062805)
chr5 (102-140)||(30838361-30838401)
[»] chr1 (3 HSPs)
chr1 (3-63)||(35883504-35883564)
chr1 (102-140)||(43891765-43891803)
chr1 (6-59)||(49139640-49139693)
[»] chr6 (1 HSPs)
chr6 (102-140)||(20029296-20029336)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 102 - 325
Target Start/End: Complemental strand, 26509509 - 26509286
Alignment:
Q  102 taaaaacacatgtgagtatgagagagggttgtttcaaaattacatgagatagtgactggtttgtgtcttactgttgagatgaggtttaattaccttttta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  26509509 taaaaacacatgtgagtatgagagagggttgtttcaaaattacatgagatagtgactggttagtgtcttactgttgagatgaggtttaatgaccttttta 26509410  T
Q  202 aatcatcttttactgttttgccatttccaaagttatagctagaccagatttaggggtataatcaagattgtaaaactcaatggagcttccataaactgaa 301  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26509409 aatcatcttttattgttttgccatttccaaagttatagctagaccagatttaggggtataatcaagattgtaaaactcaatggagcttccataaactgaa 26509310  T
Q  302 ctcatataattgactctaaatatt 325  Q
    ||||||||||||||||||||||||    
T  26509309 ctcatataattgactctaaatatt 26509286  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 21467557 - 21467483
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||| ||| ||||||||    
T  21467557 tgatatttgtacaaccaattttgtacaactcttgtgacaactatttttctcatc-ttttattggacaaaaacaatg 21467483  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26509591 - 26509535
Alignment:
Q  20 tttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  26509591 tttgtacaactcttgtgacaactacttttctcctctttttattggacaaaaacaatg 26509535  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13592933 - 13592860
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaa 74  Q
    ||||||||||||||  |||||||||||  ||||||||||| || ||||||||||||||||||||| | ||||||    
T  13592933 tgatatttgtacaataaattttgtacggttcttgtgacaattaattttctcctctttttattgaaaaaaaacaa 13592860  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23262885 - 23262824
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttatt 62  Q
    |||||||| ||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||    
T  23262885 tgatatttttacaaccaattttgtacaacttttgtgataactatttttctcctctttttatt 23262824  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45108610 - 45108657
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 48  Q
    |||||||||||||||||||||||||| |||||||||| || |||||||    
T  45108610 tgatatttgtacaaccaattttgtacaactcttgtgataattactttt 45108657  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26629004 - 26629051
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 48  Q
    |||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  26629004 tgatatttgtacaaccaattttgtacaacatttgtgacaaccactttt 26629051  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 30170725 - 30170765
Alignment:
Q  102 taaaaacacatgtgagtatgagagag--ggttgtttcaaaa 140  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  30170725 taaaaacacatgtgagtatgagagagatggttgtttcaaaa 30170765  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13140198 - 13140273
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  13140198 tgatatttgtacaaccaattttgtacaactcttgtgacaactacttttctcctctttctattgaacagaaacaatg 13140273  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 40293313 - 40293275
Alignment:
Q  102 taaaaacacatgtgagtatgagagagggttgtttcaaaa 140  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40293313 taaaaacacatgtgagtatgagagagggttgtttcaaaa 40293275  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 40293394 - 40293337
Alignment:
Q  19 ttttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||| | |||||||||||||| |||| |||||||||||||||||| ||||||||    
T  40293394 ttttgtacaaatcttgtgacaactatttttttcctctttttattgaacaaaaacaatg 40293337  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10376203 - 10376141
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattg 63  Q
    |||||||||||||||||||| | ||| | |||||| ||||| | |||||||||||||||||||    
T  10376203 tgatatttgtacaaccaattgtatacaattcttgtaacaaccatttttctcctctttttattg 10376141  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 13140299 - 13140337
Alignment:
Q  102 taaaaacacatgtgagtatgagagagggttgtttcaaaa 140  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  13140299 taaaaacacatgtgagtatgagagagagttgtttcaaaa 13140337  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 29963755 - 29963707
Alignment:
Q  28 actcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||||||||  |||||||||||||| |||||| ||| ||||||||    
T  29963755 actcttgtgacaatcacttttctcctcttcttattggacaaaaacaatg 29963707  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11813521 - 11813446
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  11813521 tgatatttgtacaaccaattttgtataactcttgtgacaactacttttctcctctttttattggacaaaaacaatg 11813446  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34820772 - 34820698
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaat 75  Q
    ||||||||| |||| ||||||||||| |||||||||||| |||||||||| || ||||||||| ||| |||||||    
T  34820772 tgatatttgcacaatcaattttgtacaactcttgtgacatctacttttcttctttttttattggacaaaaacaat 34820698  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 31415112 - 31415185
Alignment:
Q  3 atatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  31415112 atatttatacaaccaattttgtacaactcttgtgacaactacttttcttctctttttattggacaaaaacaatg 31415185  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18423659 - 18423733
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  18423659 tgatatttgtacg-ccaattttgtacaactcttgtgacaactacttttcttctctttttattggacaaaaacaatg 18423733  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 28481854 - 28481816
Alignment:
Q  102 taaaaacacatgtgagtatgagagagggttgtttcaaaa 140  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  28481854 taaaaacacatgtgagtatgagagagagttgttccaaaa 28481816  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 31227548 - 31227586
Alignment:
Q  102 taaaaacacatgtgagtatgagagagggttgtttcaaaa 140  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  31227548 taaaaaaacatgtgagtatgagagagagttgtttcaaaa 31227586  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34432392 - 34432466
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaat 75  Q
    |||||||||||||||||||||||||| ||| || ||||||| | ||||   || ||||||||| ||| |||||||    
T  34432392 tgatatttgtacaaccaattttgtacaacttttttgacaaccattttttctctatttttattggacaaaaacaat 34432466  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 29472027 - 29472067
Alignment:
Q  102 taaaaacacatgtgagtatgagaga--gggttgtttcaaaa 140  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  29472027 taaaaacacatgtgagtatgagagagggggttgtttcaaaa 29472067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30838260 - 30838335
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| | | ||||||||    
T  30838260 tgatatttgtacagccaattttgtacaactcttgttacaactacttttctcctctttttattggataaaaacaatg 30838335  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14062730 - 14062805
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| | |||||||||| ||| ||||||||    
T  14062730 tgatatttatacaaccaattttgtacaactcttatgacaactacttttctacactttttattggacaaaaacaatg 14062805  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 30838361 - 30838401
Alignment:
Q  102 taaaaacacatgtgagtatgagagag--ggttgtttcaaaa 140  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  30838361 taaaaacacatgtgagtatgagagagatggttgtttcaaaa 30838401  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 35883504 - 35883564
Alignment:
Q  3 atatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattg 63  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||   ||||||||||||    
T  35883504 atatttgtacaaccaattttgtacaacctttgtgacaaccactttttctctctttttattg 35883564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 43891765 - 43891803
Alignment:
Q  102 taaaaacacatgtgagtatgagagagggttgtttcaaaa 140  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  43891765 taaaaacacatgtaagtatgagagagagttgtttcaaaa 43891803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 49139640 - 49139693
Alignment:
Q  6 tttgtacaaccaattttgtacgactcttgtgacaactacttttctcctcttttt 59  Q
    ||||||||| ||||||||||  ||| || ||||||||| |||||||||||||||    
T  49139640 tttgtacaatcaattttgtataacttttatgacaactatttttctcctcttttt 49139693  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 20029336 - 20029296
Alignment:
Q  102 taaaaacacatgtgagtatgagagag--ggttgtttcaaaa 140  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  20029336 taaaaacacatgtgagtatgagagagaaggttgtttcaaaa 20029296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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