View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5710-Insertion-1 (Length: 966)

Name: NF5710-Insertion-1
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5710-Insertion-1
NF5710-Insertion-1
[»] chr7 (15 HSPs)
chr7 (8-876)||(322392-323260)
chr7 (776-875)||(10286857-10286957)
chr7 (776-873)||(1576274-1576372)
chr7 (776-873)||(27393015-27393113)
chr7 (427-516)||(33971323-33971412)
chr7 (776-873)||(36482230-36482328)
chr7 (912-951)||(10286790-10286829)
chr7 (912-954)||(323288-323330)
chr7 (776-862)||(7137942-7138029)
chr7 (776-876)||(36582088-36582189)
chr7 (912-951)||(1576205-1576244)
chr7 (912-951)||(8080885-8080924)
chr7 (912-951)||(27392946-27392985)
chr7 (770-812)||(42179333-42179375)
chr7 (776-862)||(43306247-43306335)
[»] chr8 (27 HSPs)
chr8 (43-335)||(18295045-18295345)
chr8 (776-875)||(4603050-4603150)
chr8 (776-874)||(32907361-32907460)
chr8 (776-873)||(1265536-1265634)
chr8 (776-873)||(6345727-6345825)
chr8 (776-873)||(31126838-31126936)
chr8 (776-873)||(37948522-37948620)
chr8 (776-873)||(43619617-43619715)
chr8 (776-875)||(4267794-4267894)
chr8 (912-951)||(4602983-4603022)
chr8 (912-951)||(32907293-32907332)
chr8 (8-43)||(18295365-18295400)
chr8 (784-873)||(26720734-26720824)
chr8 (776-812)||(8081846-8081882)
chr8 (775-823)||(40436377-40436425)
chr8 (912-951)||(1265467-1265506)
chr8 (912-951)||(6345658-6345697)
chr8 (912-951)||(10182916-10182955)
chr8 (776-835)||(11660964-11661023)
chr8 (779-876)||(11863953-11864056)
chr8 (456-511)||(24684455-24684510)
chr8 (912-951)||(26720863-26720902)
chr8 (912-951)||(31126966-31127005)
chr8 (912-951)||(37948650-37948689)
chr8 (912-951)||(43619745-43619784)
chr8 (666-704)||(24684676-24684714)
chr8 (781-872)||(41580436-41580529)
[»] chr4 (28 HSPs)
chr4 (776-876)||(47498424-47498525)
chr4 (43-256)||(47850892-47851105)
chr4 (775-876)||(46251516-46251618)
chr4 (776-873)||(9280355-9280453)
chr4 (776-873)||(24574735-24574833)
chr4 (776-874)||(34277389-34277488)
chr4 (331-430)||(23849548-23849642)
chr4 (776-869)||(42430437-42430531)
chr4 (451-516)||(23849693-23849758)
chr4 (779-876)||(42414129-42414226)
chr4 (912-951)||(46251645-46251684)
chr4 (912-951)||(47498552-47498591)
chr4 (660-711)||(47850488-47850538)
chr4 (776-876)||(3757385-3757486)
chr4 (330-398)||(47850787-47850855)
chr4 (912-953)||(42430362-42430403)
chr4 (776-840)||(7700738-7700802)
chr4 (776-840)||(56078879-56078943)
chr4 (912-951)||(9280286-9280325)
chr4 (776-835)||(19615144-19615203)
chr4 (912-951)||(24319420-24319459)
chr4 (912-951)||(24574863-24574902)
chr4 (776-862)||(44720654-44720741)
chr4 (912-951)||(47975341-47975380)
chr4 (912-951)||(56078789-56078828)
chr4 (782-863)||(24859396-24859478)
chr4 (912-945)||(23695614-23695647)
chr4 (771-808)||(35747777-35747814)
[»] chr3 (13 HSPs)
chr3 (776-875)||(32055434-32055534)
chr3 (778-876)||(39716828-39716927)
chr3 (778-876)||(25706722-25706821)
chr3 (776-873)||(37282225-37282323)
chr3 (776-873)||(19636123-19636221)
chr3 (445-508)||(45401095-45401158)
chr3 (912-951)||(32055552-32055591)
chr3 (711-777)||(42321507-42321573)
chr3 (331-430)||(45401207-45401301)
chr3 (912-951)||(39716950-39716989)
chr3 (776-873)||(48973317-48973416)
chr3 (912-951)||(25706656-25706695)
chr3 (776-869)||(1030916-1031009)
[»] chr2 (10 HSPs)
chr2 (776-875)||(18512001-18512101)
chr2 (776-873)||(16672438-16672536)
chr2 (781-876)||(22596779-22596875)
chr2 (912-951)||(18511934-18511973)
chr2 (779-876)||(21351880-21351978)
chr2 (912-951)||(16672374-16672413)
chr2 (912-951)||(22596714-22596753)
chr2 (776-874)||(42295372-42295471)
chr2 (912-951)||(42295500-42295539)
chr2 (912-945)||(29772575-29772608)
[»] chr6 (11 HSPs)
chr6 (776-876)||(21947129-21947230)
chr6 (427-507)||(6873227-6873307)
chr6 (775-873)||(7607859-7607958)
chr6 (776-876)||(30395992-30396093)
chr6 (776-874)||(16110649-16110748)
chr6 (776-873)||(16704942-16705040)
chr6 (912-951)||(21947063-21947102)
chr6 (607-639)||(6873076-6873108)
chr6 (773-840)||(4463766-4463833)
chr6 (912-951)||(7607988-7608027)
chr6 (912-951)||(16705070-16705109)
[»] chr5 (11 HSPs)
chr5 (775-873)||(40987770-40987869)
chr5 (816-873)||(13555198-13555256)
chr5 (776-876)||(1495445-1495546)
chr5 (793-865)||(13521862-13521935)
chr5 (776-876)||(27111093-27111194)
chr5 (787-874)||(42715738-42715826)
chr5 (912-951)||(1495573-1495612)
chr5 (776-874)||(35449205-35449304)
chr5 (776-840)||(41061707-41061771)
chr5 (912-951)||(40987701-40987740)
chr5 (770-858)||(25932604-25932693)
[»] chr1 (8 HSPs)
chr1 (776-873)||(14462132-14462230)
chr1 (775-873)||(5559820-5559919)
chr1 (286-335)||(2429231-2429280)
chr1 (776-876)||(41198075-41198176)
chr1 (783-874)||(24063496-24063588)
chr1 (768-812)||(16529604-16529648)
chr1 (912-951)||(14462063-14462102)
chr1 (779-812)||(22173374-22173407)
[»] scaffold0396 (2 HSPs)
scaffold0396 (776-876)||(843-944)
scaffold0396 (912-951)||(971-1010)


Alignment Details
Target: chr7 (Bit Score: 800; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 800; E-Value: 0
Query Start/End: Original strand, 8 - 876
Target Start/End: Original strand, 322392 - 323260
Alignment:
Q  8 acttggtcgttatgacatttgaatggatttatgaaagctttcatacttttattgctgatttcaatcaatattactactactactccatataaatccccta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  322392 acttggtcgttatgacatttgaatggatttatgaaagctttcatacttttattgctgatttcaatcaatattactactactattccatataaatccccta 322491  T
Q  108 agtactgctattctcctatttactgccattccattaattcnnnnnnnnnnngaactcaattcattactttgttgctctttgttcctgttttaagttaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  322492 agtactgctattctcctatttactgccattccattaattcaaaaaaaaaa-gaactcaattcattactttgttgctctttgttcttgttttaagttaatt 322590  T
Q  208 ccaattctgaatcattactgtgccactgcttgcctcgaacctttgtgaacgctgcatggctaattaatccaacaatgtcgtgctagtttcatcaaattgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322591 ccaattctgaatcattactgtgccactgcttgcctcgaacctttgtgaacgctgcatggctaattaatccaacaatgtcgtgctagtttcatcaaattgg 322690  T
Q  308 tggataaattgcttgctgcagctttgttcttataattaaggcatgtgatcatgtcaaaataatgaaaattatgcaaactttcaatgtgatagatagtaag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322691 tggataaattgcttgctgcagctttgttcttataattaaggcatgtgatcatgtcaaaataatgaaaattatgcaaactttcaatgtgatagatagtaag 322790  T
Q  408 aaatacgatttacctgctaattgttatggaaaatcccaaaatcgtaaagtttagaataaaattcaagtggagtgccaaagaggaaataatagaaccaaaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322791 aaatacgatttacctgctaattgttatggaaaatcccaaaatcgtaaagtttagaataaaattcaagtggagtgccaaagaggaaataatagaaccaaaa 322890  T
Q  508 ttgtcttatataattgccgtagaatgcagtaatttccataacatactgttatgaagatgtctccctaacgtatccggtttatatctccctaatgtatcat 607  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322891 ttgtcttatataattgccgtagaatggagtaatttccataacatactgttatgaagatgtctccctaacgtatccggtttatatctccctaatgtatcat 322990  T
Q  608 gtagttatcttcctaactagttcggtatatattcttatataaaaggtcaatctcggtattttagggggccttcggagattttggggggcttaaaaagcaa 707  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322991 gtagttatcttcctaactagttcagtatatattcttatataaaaggtcaatctcggtattttagggggccttcggagattttggggggcttaaaaagcaa 323090  T
Q  708 tcttggctcgtattattttcgaaggcccaatcaataaacctaggtttctgataacacaccactatatataggggtgttcgcggtccggtttggatcggtt 807  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  323091 tcttggctcgtattattttcgaaggcccaatcaattaacctaggtttctgataacacgccactatatataggggtgttcgcggtccggtttggatcggtt 323190  T
Q  808 ttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattattct 876  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  323191 ttgagaggaaaagtgaaccgatccaaaataaaaattatgcgcggttcggttcggtttggatgattattct 323260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 776 - 875
Target Start/End: Complemental strand, 10286957 - 10286857
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  10286957 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatgattatt 10286858  T
Q  875 c 875  Q
    |    
T  10286857 c 10286857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 776 - 873
Target Start/End: Complemental strand, 1576372 - 1576274
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  1576372 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 1576274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 776 - 873
Target Start/End: Complemental strand, 27393113 - 27393015
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    ||||||||||||||||||||||| |||||||||||||   |||| | || ||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  27393113 taggggtgttcgcggtccggtttagatcggttttgaggttaaaaatcaatcgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 27393015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 427 - 516
Target Start/End: Complemental strand, 33971412 - 33971323
Alignment:
Q  427 attgttatggaaaatcccaaaatcgtaaagtttagaataaaattcaagtggagtgccaaagaggaaataatagaaccaaaattgtcttat 516  Q
    ||||| |||||||| ||||||||||||| || ||||||||||||||||| |||||  ||||||||||||| || ||||||||||| ||||    
T  33971412 attgtgatggaaaaacccaaaatcgtaaggtatagaataaaattcaagtcgagtgtaaaagaggaaataaaagtaccaaaattgtgttat 33971323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 36482230 - 36482328
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattat 873  Q
    ||||||||||||||||| |||||||||||||||| ||   || | | |||||||||||||||||| | |   |||||||||||||||||||||||||||    
T  36482230 taggggtgttcgcggtctggtttggatcggtttttaggcaaataatcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgattat 36482328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 10286829 - 10286790
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10286829 aatatatgcggtttattttggatcggtttttggacatcca 10286790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 912 - 954
Target Start/End: Original strand, 323288 - 323330
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatccagag 954  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  323288 aatatatgcggtttattttggatcgatttttggacatccagag 323330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 776 - 862
Target Start/End: Complemental strand, 7138029 - 7137942
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaata-aaattatgcgcggttcggttcggtt 862  Q
    |||||||||||||||| ||||| || |||||| ||||   |||||||||||||||||||| | ||| |||| ||||||||| ||||||    
T  7138029 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaataaaatatgtgcggttcggctcggtt 7137942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 776 - 876
Target Start/End: Original strand, 36582088 - 36582189
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||| ||||| |||||| |||||||||| ||   ||| || |||||||||||||| |||||||   | |||||||||||||||| |||| ||||    
T  36582088 taggggtgtttgcggtgcggtttagatcggttttaaggcaaaacgtcaaccgatccaaaataaaaattacatgtggttcggttcggtttgaatgagtatt 36582187  T
Q  875 ct 876  Q
    ||    
T  36582188 ct 36582189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 1576244 - 1576205
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  1576244 aatatatgcggtttaatttggatcggtttttggatatcca 1576205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 8080924 - 8080885
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  8080924 aatatatgcggtttaatttggatcggtttttggatatcca 8080885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 27392985 - 27392946
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  27392985 aatatatgcggtttaatttggatcggtttttggatatcca 27392946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 770 - 812
Target Start/End: Original strand, 42179333 - 42179375
Alignment:
Q  770 tatatataggggtgttcgcggtccggtttggatcggttttgag 812  Q
    |||| |||||||||||||||||  |||||||||||||||||||    
T  42179333 tatagataggggtgttcgcggtttggtttggatcggttttgag 42179375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 776 - 862
Target Start/End: Complemental strand, 43306335 - 43306247
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaata--aaattatgcgcggttcggttcggtt 862  Q
    |||||||||||||||| ||||| |  |||||| |||    |||||||||||||||||||| |  ||| |||| ||||||||||||||||    
T  43306335 taggggtgttcgcggtgcggttcgtctcggttatgaagcaaaaagtgaaccgatccaaaaaaataaaatatgtgcggttcggttcggtt 43306247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 6e-52; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 43 - 335
Target Start/End: Complemental strand, 18295345 - 18295045
Alignment:
Q  43 agctttcatacttttattgctgatttcaatcaatattactactactact---ccatataaatcccctaagtactgctattctcctatttactgccattcc 139  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||   |||||||||| ||   ||| |||||||||||||||||||||||||||     
T  18295345 agctttcatacttttgttgctgatttaaatcaatattactactactactattccatataaattccg--agtgctgctattctcctatttactgccattca 18295248  T
Q  140 attaattcnnnnnnnnnnngaactcaattcattactttgttgctct---------ttgttcctgttttaagttaattccaattctgaatcattactgtgc 230  Q
    ||||||||           || ||||||| |||||| ||||||| |         |||||||||||||||||||||||||||||||| |||||| |||||    
T  18295247 attaattcaaaaaaa----gatctcaattaattactctgttgctatgcgtgctacttgttcctgttttaagttaattccaattctgattcattattgtgc 18295152  T
Q  231 cactgct--tgcctcgaacctttgtgaacgctgcatggctaattaatccaacaatgtcgtgctagtttcatcaaattggtggataaattgcttgctgcag 328  Q
     |||| |  ||||| ||||| ||||||||| ||| |||||||||||||||||| || |||||||||||  |||||||||||||| ||||| |||||||||    
T  18295151 tactgttggtgccttgaaccattgtgaacgttgcgtggctaattaatccaacactgccgtgctagtttattcaaattggtggatgaattggttgctgcag 18295052  T
Q  329 ctttgtt 335  Q
    |||||||    
T  18295051 ctttgtt 18295045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 776 - 875
Target Start/End: Complemental strand, 4603150 - 4603050
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  4603150 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatgattatt 4603051  T
Q  875 c 875  Q
    |    
T  4603050 c 4603050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 776 - 874
Target Start/End: Complemental strand, 32907460 - 32907361
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  32907460 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcagtttggatgattatt 32907361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 776 - 873
Target Start/End: Complemental strand, 1265634 - 1265536
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  1265634 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 1265536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 776 - 873
Target Start/End: Complemental strand, 6345825 - 6345727
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  6345825 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 6345727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 31126838 - 31126936
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  31126838 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 31126936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 37948522 - 37948620
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  37948522 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 37948620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 43619617 - 43619715
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  43619617 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 43619715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 776 - 875
Target Start/End: Complemental strand, 4267894 - 4267794
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||||||||| |||||||||||| |||||||   ||| || |||||||||||||||||| | |   |||||||||||| |||||||||| ||||    
T  4267894 taggggtgttcgcggtgcggtttggatcgattttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcagtttggatgagtatt 4267795  T
Q  875 c 875  Q
    |    
T  4267794 c 4267794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 4603022 - 4602983
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4603022 aatatatgcggtttattttggatcggtttttggacatcca 4602983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 32907332 - 32907293
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32907332 aatatatgcggtttattttggatcggtttttggacatcca 32907293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 18295400 - 18295365
Alignment:
Q  8 acttggtcgttatgacatttgaatggatttatgaaa 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  18295400 acttggtcgttatgacatttgaatggatttatgaaa 18295365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 784 - 873
Target Start/End: Original strand, 26720734 - 26720824
Alignment:
Q  784 ttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattat 873  Q
    ||||||||||||||| |||  ||||||||   |||| | |||||||| ||||||||| | ||| ||||||||||||||||||||| |||||    
T  26720734 ttcgcggtccggtttagattagttttgaggtaaaaaattaaccgatctaaaataaaaatcatgtgcggttcggttcggtttggattattat 26720824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 812
Target Start/End: Complemental strand, 8081882 - 8081846
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgag 812  Q
    |||||||||||||||||||||||||||| ||||||||    
T  8081882 taggggtgttcgcggtccggtttggatcagttttgag 8081846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 823
Target Start/End: Original strand, 40436377 - 40436425
Alignment:
Q  775 ataggggtgttcgcggtccggtttggatcggttttgagaggaaaagtga 823  Q
    ||||||||||||||||| |||||||| ||||||||||| | ||||||||    
T  40436377 ataggggtgttcgcggtgcggtttggttcggttttgagggtaaaagtga 40436425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 1265506 - 1265467
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  1265506 aatatatgcggtttaatttggatcggtttttggatatcca 1265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 6345697 - 6345658
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  6345697 aatatatgcggtttaatttggatcggtttttggatatcca 6345658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 10182916 - 10182955
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  10182916 aatatatgcggtttaatttggatcggtttttggatatcca 10182955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 835
Target Start/End: Original strand, 11660964 - 11661023
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaa 835  Q
    |||||||||||||||| ||||| || |||||| ||||   ||||||||||||||||||||    
T  11660964 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaa 11661023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 779 - 876
Target Start/End: Complemental strand, 11864056 - 11863953
Alignment:
Q  779 gggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt---atgcg---cggttcggttcggtttggatgatta 872  Q
    ||||||||||||| |||||||||| |||||||||   ||| || || ||||||||||||||| |   |||||   ||||| |||||||||||||||| ||    
T  11864056 gggtgttcgcggtgcggtttggattggttttgaggtaaaatgtcaatcgatccaaaataaaaattacatgcggttcggtttggttcggtttggatgagta 11863957  T
Q  873 ttct 876  Q
    ||||    
T  11863956 ttct 11863953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 511
Target Start/End: Original strand, 24684455 - 24684510
Alignment:
Q  456 gtttagaataaaattcaagtggagtgccaaagaggaaataatagaaccaaaattgt 511  Q
    |||||||| |||||| ||||||||||| ||||||||||||| || |||||| ||||    
T  24684455 gtttagaagaaaatttaagtggagtgcaaaagaggaaataaaagtaccaaatttgt 24684510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 26720863 - 26720902
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  26720863 aatatatgcggtttaatttggatcggtttttggatatcca 26720902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 31126966 - 31127005
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  31126966 aatatatgcggtttaatttggatcggtttttggatatcca 31127005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 37948650 - 37948689
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  37948650 aatatatgcggtttaatttggatcggtttttggatatcca 37948689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 43619745 - 43619784
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  43619745 aatatatgcggtttaatttggatcggtttttggatatcca 43619784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 666 - 704
Target Start/End: Original strand, 24684676 - 24684714
Alignment:
Q  666 ttttagggggccttcggagattttggggggcttaaaaag 704  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  24684676 ttttagggggccttgggagatttttgggggcttaaaaag 24684714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 872
Target Start/End: Complemental strand, 41580529 - 41580436
Alignment:
Q  781 gtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaa-ataaaattatgcgcggttcggttcgg-tttggatgatta 872  Q
    |||||||| |||||| ||| ||||||||||||   |||| | | |||||||||| ||||||||||  || ||||||||||| ||||||||||||    
T  41580529 gtgttcgctgtccgggttgaatcggttttgaggcaaaaactcatccgatccaaagataaaattatatgcagttcggttcggttttggatgatta 41580436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 5e-43; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 776 - 876
Target Start/End: Original strand, 47498424 - 47498525
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  47498424 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatgattatt 47498523  T
Q  875 ct 876  Q
    ||    
T  47498524 ct 47498525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 43 - 256
Target Start/End: Complemental strand, 47851105 - 47850892
Alignment:
Q  43 agctttcatacttttattgctgatttcaatcaatattactactactactccatataaatcccctaagtactgctattctcctatttactgccattccatt 142  Q
    ||||||||||||||| || | ||||||||||||||||||| |||||| |||||||| || || |  |||||||||||||||||||| |||||||||||||    
T  47851105 agctttcatacttttgttccagatttcaatcaatattactgctactattccatatatattccttgggtactgctattctcctatttgctgccattccatt 47851006  T
Q  143 aattcnnnnnnnnnnngaactcaattcattactttgttgctct--ttgttcctgttttaagttaattccaattctgaatcattactgtgccactgct--t 238  Q
    ||||            ||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||| | |||| |  |    
T  47851005 aatt----aaaaaaaggaacttaattcattactttgttgcgctacttgttcctgttttaagttaattccaattctgaatcattattgtactactgttggt 47850910  T
Q  239 gcctcgaacctttgtgaa 256  Q
    |||| |||||||||||||    
T  47850909 gccttgaacctttgtgaa 47850892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 775 - 876
Target Start/End: Original strand, 46251516 - 46251618
Alignment:
Q  775 ataggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  46251516 ataggggtgttcacggtccggtttggatcggttttgagagaaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatggttat 46251615  T
Q  874 tct 876  Q
    |||    
T  46251616 tct 46251618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 776 - 873
Target Start/End: Complemental strand, 9280453 - 9280355
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||| ||||||||| ||||| | | |||||||||||||||||||||||||||    
T  9280453 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccaatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 9280355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 24574735 - 24574833
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | ||||||| |||||||||| | |   |||||||||||||||||||||||||||    
T  24574735 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatacaaaataaaaatcacatgcggttcggttcggtttggatgattat 24574833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 776 - 874
Target Start/End: Complemental strand, 34277488 - 34277389
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||||||||| ||||||||||||||||||||   ||| || |||||||||||||||||| | |   ||||||||||||||||||||||| ||||    
T  34277488 taggggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgagtatt 34277389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 331 - 430
Target Start/End: Original strand, 23849548 - 23849642
Alignment:
Q  331 ttgttcttataattaaggcatgtgatcatgtcaaaataatgaaaattatgcaaactttcaatgtgatagatagtaagaaatacgatttacctgctaattg 430  Q
    ||||||||||||||||| |||||| |||| |||||| ||||||||||||||| |||||||||||     |||| |||||||| |||||||||| ||||||    
T  23849548 ttgttcttataattaag-catgtgttcatatcaaaagaatgaaaattatgcagactttcaatgt----aataggaagaaatatgatttacctgttaattg 23849642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 776 - 869
Target Start/End: Complemental strand, 42430531 - 42430437
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatga 869  Q
    |||||||||||||||| ||||||||||||||||||||   ||| || |||| ||||||||| |||||||   |||| ||||||||||||||||||    
T  42430531 taggggtgttcgcggtgcggtttggatcggttttgaggcaaaatgtcaacccatccaaaataaaaattacatgcggatcggttcggtttggatga 42430437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 23849693 - 23849758
Alignment:
Q  451 gtaaagtttagaataaaattcaagtggagtgccaaagaggaaataatagaaccaaaattgtcttat 516  Q
    ||||||||||||||| |||||||||||||||| |||||| || ||| |||||||||||||| ||||    
T  23849693 gtaaagtttagaatataattcaagtggagtgcaaaagagcaattaagagaaccaaaattgtgttat 23849758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 779 - 876
Target Start/End: Original strand, 42414129 - 42414226
Alignment:
Q  779 gggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaattatgcgcggttcggttcggtttggatgattattct 876  Q
    ||||||||||||| ||||||||||||||||||||   ||| || ||||||| ||||  ||||| |   ||||||||||||||||||||||| ||||||    
T  42414129 gggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgattcaaataaaaatcacatgcggttcggttcggtttggatgagtattct 42414226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 46251645 - 46251684
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46251645 aatatatgcggtttattttggatcggtttttggacatcca 46251684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 47498552 - 47498591
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47498552 aatatatgcggtttattttggatcggtttttggacatcca 47498591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 660 - 711
Target Start/End: Complemental strand, 47850538 - 47850488
Alignment:
Q  660 tcggtattttagggggccttcggagattttggggggcttaaaaagcaatctt 711  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  47850538 tcggtattttagggggcctttggagattttg-ggggcttaaaaagcaatctt 47850488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 876
Target Start/End: Complemental strand, 3757486 - 3757385
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||||  || |||||||||||||||||||||  ||| || |||||||||||||||||| | |   || ||||||||||||||| |||| ||||    
T  3757486 taggggtgttcggagtgcggtttggatcggttttgagacaaaatgtcaaccgatccaaaataaaaatcacatgccgttcggttcggtttgaatgagtatt 3757387  T
Q  875 ct 876  Q
    ||    
T  3757386 ct 3757385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 47850855 - 47850787
Alignment:
Q  330 tttgttcttataattaaggcatgtgatcatgtcaaaataatgaaaattatgcaaactttcaatgtgata 398  Q
    |||||| |||||||||||||| ||| | ||||||||| ||||||| ||||||  |||||||||||||||    
T  47850855 tttgtttttataattaaggcacgtgtttatgtcaaaacaatgaaagttatgcggactttcaatgtgata 47850787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 912 - 953
Target Start/End: Complemental strand, 42430403 - 42430362
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatccaga 953  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  42430403 aatatatgcggtttaatttggatcgatttttggacatccaga 42430362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 840
Target Start/End: Complemental strand, 7700802 - 7700738
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaa 840  Q
    ||||||| || |||||||| ||||||| |||||||||   |||||| ||||||||||||||||||    
T  7700802 taggggtctttgcggtccgatttggattggttttgaggtaaaaagtcaaccgatccaaaataaaa 7700738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 840
Target Start/End: Complemental strand, 56078943 - 56078879
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaa 840  Q
    |||||||||| ||| |||||||| |||||  |||||||  |||||| ||||||||||||||||||    
T  56078943 taggggtgtttgcgatccggtttagatcgactttgagacaaaaagtcaaccgatccaaaataaaa 56078879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 9280325 - 9280286
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  9280325 aatatatgcggtttaatttggatcggtttttggatatcca 9280286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 835
Target Start/End: Complemental strand, 19615203 - 19615144
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaa 835  Q
    |||||||||||||||| ||||| || |||||| ||||   ||||||||||||||||||||    
T  19615203 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaa 19615144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 24319459 - 24319420
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  24319459 aatatatgcggtttaatttggatcggtttttggatatcca 24319420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 24574863 - 24574902
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  24574863 aatatatgcggtttaatttggatcggtttttggatatcca 24574902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 862
Target Start/End: Original strand, 44720654 - 44720741
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaata-aaattatgcgcggttcggttcggtt 862  Q
    |||||||||||||||| ||||| || |||||| |||    |||||||||||||||||||| | ||| |||| ||||||||| ||||||    
T  44720654 taggggtgttcgcggtgcggttcggttcggttatgaagcaaaaagtgaaccgatccaaaaaataaaatatgtgcggttcggctcggtt 44720741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 47975341 - 47975380
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  47975341 aatatatgcggtttgatttggatcggtttttggacatcca 47975380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 56078828 - 56078789
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  56078828 aatatatgcggtttaatttggatcgatttttggacatcca 56078789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 782 - 863
Target Start/End: Complemental strand, 24859478 - 24859396
Alignment:
Q  782 tgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatcc-aaaataaaattatgcgcggttcggttcggttt 863  Q
    |||||||||||||||||||||| ||||||||   |||| | | ||||||| |||||||||||||  |||| || |||||||||    
T  24859478 tgttcgcggtccggtttggatccgttttgaggcaaaaactcatccgatccaaaaataaaattatatgcggatcagttcggttt 24859396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 912 - 945
Target Start/End: Original strand, 23695614 - 23695647
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttgga 945  Q
    ||||||||||||||| ||||||||||||||||||    
T  23695614 aatatatgcggtttaatttggatcggtttttgga 23695647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 808
Target Start/End: Complemental strand, 35747814 - 35747777
Alignment:
Q  771 atatataggggtgttcgcggtccggtttggatcggttt 808  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  35747814 atatttaggggtgtttgcggtccggtttggatcggttt 35747777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 776 - 875
Target Start/End: Original strand, 32055434 - 32055534
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  32055434 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatgattatt 32055533  T
Q  875 c 875  Q
    |    
T  32055534 c 32055534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 778 - 876
Target Start/End: Original strand, 39716828 - 39716927
Alignment:
Q  778 ggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattattct 876  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||| |||||||||||||| |||||||||||||||    
T  39716828 ggggtgttcgcggtccggtttggatcggttttgaggggaaaagtgaactgatccaaaataaaaatcatgtgcggttcggttcggcttggatgattattct 39716927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 778 - 876
Target Start/End: Complemental strand, 25706821 - 25706722
Alignment:
Q  778 ggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattattct 876  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  25706821 ggggtgttcgcggttcggtttggatcgattttgaggggaaaagtgaaccgatctaaaataaaaatcatgtgcggttcggttcggtttggatgattattct 25706722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 37282225 - 37282323
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  37282225 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcatgtgcggttcggttcggtttggatgattat 37282323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 19636123 - 19636221
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    ||||||||||||||||||| |||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  19636123 taggggtgttcgcggtccgatttggatcggttttgaggtaaaaaattaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 19636221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 445 - 508
Target Start/End: Complemental strand, 45401158 - 45401095
Alignment:
Q  445 aaaatcgtaaagtttagaataaaattcaagtggagtgccaaagaggaaataatagaaccaaaat 508  Q
    |||||| ||||||||||||||||||||||||| ||||  ||||||||||||| |||||||||||    
T  45401158 aaaatcataaagtttagaataaaattcaagtgaagtgtaaaagaggaaataagagaaccaaaat 45401095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 32055552 - 32055591
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32055552 aatatatgcggtttattttggatcggtttttggacatcca 32055591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 777
Target Start/End: Complemental strand, 42321573 - 42321507
Alignment:
Q  711 tggctcgtattattttcgaaggcccaatcaataaacctaggtttctgataacacaccactatatata 777  Q
    |||| ||||||||||| ||||||||||||||| || |||||||| || |||||| ||||||||||||    
T  42321573 tggcccgtattatttttgaaggcccaatcaattaaactaggtttatgttaacacgccactatatata 42321507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 45401301 - 45401207
Alignment:
Q  331 ttgttcttataattaaggcatgtgatcatgtcaaaataatgaaaattatgcaaactttcaatgtgatagatagtaagaaatacgatttacctgctaattg 430  Q
    ||||||||||||||||| |||||| ||||||||||| ||| ||||||||||| | |||| ||||    ||||| |||||||| |||||||||| ||||||    
T  45401301 ttgttcttataattaag-catgtgttcatgtcaaaagaattaaaattatgcagattttctatgt----gataggaagaaatatgatttacctgttaattg 45401207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 39716950 - 39716989
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  39716950 aatatatgcggtttattttggatcgatttttggacatcca 39716989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 48973317 - 48973416
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgaga-ggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||| |||||| ||||||||||||||||||||   |||| | |||| ||||||||| ||||| |||   |||||| ||||||||||||||||||    
T  48973317 taggggtgtttgcggtctggtttggatcggttttgagataaaaaaatcaaccaatccaaaataaaaatcatgtaaggttcgtttcggtttggatgattat 48973416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 25706695 - 25706656
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  25706695 aatatatgcggtttattttggatcaatttttggacatcca 25706656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 869
Target Start/End: Complemental strand, 1031009 - 1030916
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatga 869  Q
    |||||||||| ||||| ||||| ||||||||||| |||  ||| || |||||||||||||||||| | |   ||||||||||||||||| |||||    
T  1031009 taggggtgtttgcggtgcggtt-ggatcggtttttagataaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttagatga 1030916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 776 - 875
Target Start/End: Complemental strand, 18512101 - 18512001
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  18512101 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatgattatt 18512002  T
Q  875 c 875  Q
    |    
T  18512001 c 18512001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 776 - 873
Target Start/End: Complemental strand, 16672536 - 16672438
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||| ||||||||||||||||||||||||||   |||| | |||| ||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  16672536 taggggtgtttgcggtccggtttggatcggttttgaggttaaaaatcaacctatccaaaataaaaatcatgtgcggttcggttcggtttggatgattat 16672438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 781 - 876
Target Start/End: Complemental strand, 22596875 - 22596779
Alignment:
Q  781 gtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattattct 876  Q
    ||||||| ||| ||||||||||||||||||||   ||| || |||||||| ||||| ||||||||| ||||||| ||||||||||||| | ||||||    
T  22596875 gtgttcggggtgcggtttggatcggttttgaggcaaaacgtcaaccgatctaaaataaaaattatgtgcggttcagttcggtttggataagtattct 22596779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 18511973 - 18511934
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18511973 aatatatgcggtttattttggatcggtttttggacatcca 18511934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 779 - 876
Target Start/End: Original strand, 21351880 - 21351978
Alignment:
Q  779 gggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattattct 876  Q
    ||||||||||||| ||||||||||||||||||||   ||| || |||||||||||||||||| | |   || ||||||||||| |||||||| ||||||    
T  21351880 gggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcagttcggttcggcttggatgaatattct 21351978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 16672413 - 16672374
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  16672413 aatatatgcggtttaatttggatcggtttttggatatcca 16672374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 22596753 - 22596714
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  22596753 aatatatgcggtttaatttggatcgatttttggacatcca 22596714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 874
Target Start/End: Original strand, 42295372 - 42295471
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||| |||| ||||||||||| ||||||||   ||| |  |||||||||||||||||| | |   | ||||||||||||||||||||| ||||    
T  42295372 taggggtgttcacggtgcggtttggatcagttttgaggtaaaatgccaaccgatccaaaataaaaatcacatgtggttcggttcggtttggatgagtatt 42295471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 42295500 - 42295539
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  42295500 aatatatgcagtttaatttggatcggtttttggacatcca 42295539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 912 - 945
Target Start/End: Complemental strand, 29772608 - 29772575
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttgga 945  Q
    ||||||||||||||| ||||||||||||||||||    
T  29772608 aatatatgcggtttaatttggatcggtttttgga 29772575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 8e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 776 - 876
Target Start/End: Complemental strand, 21947230 - 21947129
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  21947230 taggggtgttcgcggtccggtttggatcggtttttagagcaaaagtgaaccaatccaaaataaaaatcatgcgcggttcggttcggtttggatgattatt 21947131  T
Q  875 ct 876  Q
    ||    
T  21947130 ct 21947129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 427 - 507
Target Start/End: Complemental strand, 6873307 - 6873227
Alignment:
Q  427 attgttatggaaaatcccaaaatcgtaaagtttagaataaaattcaagtggagtgccaaagaggaaataatagaaccaaaa 507  Q
    |||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  6873307 attgatatggaaaatcccaaaatcgcaaggtttagaataaaattcaagtggagtgcaaaagaggaaataagagaaccaaaa 6873227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 775 - 873
Target Start/End: Original strand, 7607859 - 7607958
Alignment:
Q  775 ataggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    ||||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  7607859 ataggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 7607958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 776 - 876
Target Start/End: Complemental strand, 30396093 - 30395992
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||| ||||| |  ||||| | |||||||||||||||||||||    
T  30396093 taggggtgttcgcggtccggtttggatcggttttgaggtaaaaagtcaaccgatccaaaataaaaatcacacgcggcttggttcggtttggatgattatt 30395994  T
Q  875 ct 876  Q
    ||    
T  30395993 ct 30395992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 776 - 874
Target Start/End: Complemental strand, 16110748 - 16110649
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||| ||||||||||||||||||||||    | ||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  16110748 taggggtgttcacggtccggtttggatcggttttctatgaaaaagtgaaccgatccaaaataaaaatcatgtgcggttcggtttggtttggatgattatt 16110649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 16704942 - 16705040
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||| ||||||||||||||||||||    
T  16704942 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggtttggttcggtttggatgattat 16705040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 21947102 - 21947063
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  21947102 aatatatgcggtttattttggatcggcttttggacatcca 21947063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 607 - 639
Target Start/End: Complemental strand, 6873108 - 6873076
Alignment:
Q  607 tgtagttatcttcctaactagttcggtatatat 639  Q
    |||||||||||||||||||||||||||||||||    
T  6873108 tgtagttatcttcctaactagttcggtatatat 6873076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 840
Target Start/End: Original strand, 4463766 - 4463833
Alignment:
Q  773 atataggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaa 840  Q
    ||||||||| ||||||||| ||||||||||| |||||||||  ||| || | |||||| |||||||||    
T  4463766 atataggggggttcgcggtgcggtttggatctgttttgagaaaaaatgtcatccgatctaaaataaaa 4463833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 7607988 - 7608027
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  7607988 aatatatgcggtttaatttggatcggtttttggatatcca 7608027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 16705070 - 16705109
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  16705070 aatatatgcggtttaatttggatcggtttttggatatcca 16705109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 775 - 873
Target Start/End: Complemental strand, 40987869 - 40987770
Alignment:
Q  775 ataggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    ||||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||| ||||| | | |||||||||||||||||||||||||||    
T  40987869 ataggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattat 40987770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 816 - 873
Target Start/End: Complemental strand, 13555256 - 13555198
Alignment:
Q  816 aaaagtgaaccgatccaaaataaaa-ttatgcgcggttcggttcggtttggatgattat 873  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  13555256 aaaagtcaaccgatccaaaataaaaattatgtgcggttcggttcggtttggatgattat 13555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 776 - 876
Target Start/End: Original strand, 1495445 - 1495546
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaa-attatgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||||||||||||||||||||| ||||||||   ||| || ||||||||| ||||||| || |   | ||||||||||||||||||||| ||||    
T  1495445 taggggtgttcgcggtccggtttggatcagttttgaggtaaaatgtcaaccgatccgaaataaatatcacatgtggttcggttcggtttggatgagtatt 1495544  T
Q  875 ct 876  Q
    ||    
T  1495545 ct 1495546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 793 - 865
Target Start/End: Complemental strand, 13521935 - 13521862
Alignment:
Q  793 cggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaa-ttatgcgcggttcggttcggtttgg 865  Q
    |||||||||||| |||||||   |||| | |||||||||||||||||| ||||| |||||||||||||||||||    
T  13521935 cggtttggatcgattttgaggtaaaaaatcaaccgatccaaaataaaaattatgtgcggttcggttcggtttgg 13521862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 876
Target Start/End: Complemental strand, 27111194 - 27111093
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||| ||||| ||||||||||| ||||||||   ||| || |||||||||||||| ||||| |    |||||||||||||||||||||| ||||    
T  27111194 taggggtgtttgcggtgcggtttggatcagttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatacggttcggttcggtttggatgagtatt 27111095  T
Q  875 ct 876  Q
    ||    
T  27111094 ct 27111093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 874
Target Start/End: Original strand, 42715738 - 42715826
Alignment:
Q  787 gcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||||||||||||||||||   ||| || |||||||| ||||||||||| |   |||||||||||  |||||||||||||||    
T  42715738 gcggtccggtttggatcggttttgaggcaaaatgtcaaccgatctaaaataaaattcacatgcggttcggttttgtttggatgattatt 42715826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 1495573 - 1495612
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  1495573 aatatatgcggtttaatttggatcggtttttggacatcca 1495612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 776 - 874
Target Start/End: Original strand, 35449205 - 35449304
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||||| ||| ||||||||||  ||||||||   ||| || |||||||||||||||||| | |   ||||||||||||||||||||||| ||||    
T  35449205 taggggtgttcgtggtgcggtttggattagttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgagtatt 35449304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 840
Target Start/End: Complemental strand, 41061771 - 41061707
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaa 840  Q
    |||||||||||||||| ||||||||||||||||| ||   ||| || ||||||| ||||||||||    
T  41061771 taggggtgttcgcggtgcggtttggatcggttttaaggtaaaatgtcaaccgattcaaaataaaa 41061707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 40987740 - 40987701
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  40987740 aatatatgcggtttaatttggatcggtttttggatatcca 40987701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 858
Target Start/End: Complemental strand, 25932693 - 25932604
Alignment:
Q  770 tatatataggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaa-ataaaattatgcgcggttcggttc 858  Q
    |||||||||||||||| ||||| || ||||||||| |||||||   |||| | | ||||| |||| ||||||||||  ||||||||||||    
T  25932693 tatatataggggtgtttgcggttcgatttggatcgattttgaggcaaaaactcatccgattcaaagataaaattatatgcggttcggttc 25932604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 776 - 873
Target Start/End: Complemental strand, 14462230 - 14462132
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    |||||||||| |||||| |||||||||||||||||||   |||| | |||||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  14462230 taggggtgtttgcggtctggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaattacgtgcggttcggttcggtttggatgattat 14462132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 775 - 873
Target Start/End: Complemental strand, 5559919 - 5559820
Alignment:
Q  775 ataggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattat 873  Q
    ||||||||||||||||||||||||||||||||||||||   |||| | |||||||| ||||| ||||| | | ||||||||||||| |||||||||||||    
T  5559919 ataggggtgttcgcggtccggtttggatcggttttgaggtcaaaaatcaaccgatctaaaataaaaatcacgtgcggttcggttcgatttggatgattat 5559820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 2429231 - 2429280
Alignment:
Q  286 cgtgctagtttcatcaaattggtggataaattgcttgctgcagctttgtt 335  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2429231 cgtgctagtttcatcaaattggtggataaattgcttgctacagctttgtt 2429280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 776 - 876
Target Start/End: Original strand, 41198075 - 41198176
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaatt-atgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||||||||| | |||||||||| |||||||   ||| || |||||||||||||||||| | |   ||||||||||||||||||||||| ||||    
T  41198075 taggggtgttcgcggtgcagtttggatcgattttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgagtatt 41198174  T
Q  875 ct 876  Q
    ||    
T  41198175 ct 41198176  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 783 - 874
Target Start/End: Original strand, 24063496 - 24063588
Alignment:
Q  783 gttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaat-aaaattatgcgcggttcggttcggtttggatgattatt 874  Q
    |||||||||||||| ||| ||  ||||||||  |||||| |||||||||||||| ||||| ||| || |||||||||||| ||||| ||||||    
T  24063496 gttcgcggtccggtatgggtcaattttgagataaaaagtcaaccgatccaaaataaaaatcatgtgctgttcggttcggtctggataattatt 24063588  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 768 - 812
Target Start/End: Complemental strand, 16529648 - 16529604
Alignment:
Q  768 actatatataggggtgttcgcggtccggtttggatcggttttgag 812  Q
    ||||||| |||||||||||||||| |||||||| |||||||||||    
T  16529648 actatatttaggggtgttcgcggtgcggtttggttcggttttgag 16529604  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 951
Target Start/End: Complemental strand, 14462102 - 14462063
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  14462102 aatatatgcggtttaatttggatcggtttttggatatcca 14462063  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 779 - 812
Target Start/End: Complemental strand, 22173407 - 22173374
Alignment:
Q  779 gggtgttcgcggtccggtttggatcggttttgag 812  Q
    ||||||||||||||||||||||||| ||||||||    
T  22173407 gggtgttcgcggtccggtttggatcagttttgag 22173374  T

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Target: scaffold0396 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 876
Target Start/End: Original strand, 843 - 944
Alignment:
Q  776 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaa-attatgcgcggttcggttcggtttggatgattatt 874  Q
    ||||||||||| |||||||||||||||||||||||||   ||| || ||||||||| ||||||| |  |   || |||||||||||||||||||| ||||    
T  843 taggggtgttcacggtccggtttggatcggttttgaggtaaaatgtcaaccgatccgaaataaataccacatgcagttcggttcggtttggatgagtatt 942  T
Q  875 ct 876  Q
    ||    
T  943 ct 944  T

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Target: scaffold0396; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 912 - 951
Target Start/End: Original strand, 971 - 1010
Alignment:
Q  912 aatatatgcggtttattttggatcggtttttggacatcca 951  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  971 aatatatgcggtttaatttggatcggtttttggacatcca 1010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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