View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5710-Insertion-2 (Length: 511)
Name: NF5710-Insertion-2
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 15379835 - 15379609
Alignment:
| Q |
7 |
acatatgcaatgaagctactactaacattggaacataagaccagaaataaataaaaaatgtttgagcaaggaaatatacctgtaaatgtcactattgaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15379835 |
acatatgcaatgaagctactactaacattggaacataagaccagaaataaataaaaaatgtttgagcaaggaaatatacctgtaaatgtcactactgaga |
15379736 |
T |
|
| Q |
107 |
aggctcttgcagacgatgagatcaaagaaactcccttggatttataattttataaaatgtnnnnnnnnttaattttgcttttcmaacaatatacatattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| |
|
|
| T |
15379735 |
aggctcttgcagacgatgagatcaaagaaactcccttggatttataattttataaaatgtaaaaaaaattaattttgcttttcaaacaatatacattttt |
15379636 |
T |
|
| Q |
207 |
tatcctattacaacaaatatcccgtga |
233 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
15379635 |
tatcctattacaacaaatatcctgtga |
15379609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 266 - 507
Target Start/End: Complemental strand, 15379612 - 15379375
Alignment:
| Q |
266 |
gtgaacatgactcatttggggacgttggagtatgcaaagatcagtgtttgaaccataaatttctcacttattcattttaaaagtgaatctctagccgata |
365 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||| ||||||||||||| | ||||||| |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
15379612 |
gtgaacatgactcagttggggacgttgcagtatgcaaagaccagtgtttgaaccctgaatttcttacttattcatcttaaaagtgaatttctagccgata |
15379513 |
T |
|
| Q |
366 |
gattatacttaacnnnnnnnnnnnnttattaaaaagtattgtttagagataattctaccaatatacggtgtaaaatataaaaatatataataggttggtt |
465 |
Q |
| |
|
|| || |||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
15379512 |
gactag--ttaa-aaaaaaaaaatatcattaaaaagtattgtttaaagataattctaccaatatatagtgtaaaatataaaa-tatataataggttggtt |
15379417 |
T |
|
| Q |
466 |
tgagtctgggtgatcgaatttaaatgatgtgaattcgatagc |
507 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
15379416 |
tgagtctgggtgatcaaatttaaatgaagtgaatccgatagc |
15379375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University