View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5710-Insertion-3 (Length: 498)

Name: NF5710-Insertion-3
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5710-Insertion-3
NF5710-Insertion-3
[»] chr5 (2 HSPs)
chr5 (237-498)||(38898043-38898305)
chr5 (8-216)||(38898329-38898537)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 237 - 498
Target Start/End: Complemental strand, 38898305 - 38898043
Alignment:
Q  237 aaggaggatagaatatgatttatgttgcctttatgattctgttaatatattttaacaaagttgtgtttgatatttggggtctgttgggggaaaaaa-tgg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  38898305 aaggaggatagaatatgatttatgttgcctttatgattctgttaatatattttaacaaagttgtgtttgatatttggggtctgttaggggaaaaaaatgg 38898206  T
Q  336 tactagcatcatgctgaaagaaaccaagatgtggttttgtgagttagtgtgtgcttaatgctaccccataggtttgttgccaaattgttctgataaatta 435  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  38898205 tactagcatcatgctgaaagaaacaaagatgtggttttgtaagttagtgtgtgcttaacgctaccccataggtttgttgccaaattgttctgataaattg 38898106  T
Q  436 cgagcacaacttcatgtcttatttgtcgtgctaataaattgttctcatatcaaggacaaggat 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38898105 cgagcacaacttcatgtcttatttgtcgtgctaataaattgttctgatatcaaggacaaggat 38898043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 38898537 - 38898329
Alignment:
Q  8 agttcatcctttattggcattaagcaagtttcttaagctgatccattacgcaagattttacaatttagaatgaagttttacaacttagttcattccaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38898537 agttcatcctttattggcattaagcaagtttcttaagctgatccattaaacaagattttacaatttagaatgaagttttacaacttagttcattccaaaa 38898438  T
Q  108 ttaacgttgaacgatcctccaaacagccaaattaatctaatgtttaattttctcaaaaatacttcaatttgcttagtttattccatgaagttactttgag 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38898437 ttaacgttgaacgatcctccaaacaaccaaattaatctaatgtttaattttctcaaaaatacttcaatttgcttagtttattccatcaagttactttgag 38898338  T
Q  208 tgtttaata 216  Q
    |||||||||    
T  38898337 tgtttaata 38898329  T

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