View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5710-Insertion-6 (Length: 225)

Name: NF5710-Insertion-6
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5710-Insertion-6
NF5710-Insertion-6
[»] chr3 (7 HSPs)
chr3 (8-225)||(9757674-9757891)
chr3 (18-225)||(20959704-20959911)
chr3 (20-217)||(20973615-20973812)
chr3 (75-225)||(30496447-30496597)
chr3 (42-214)||(9761484-9761656)
chr3 (53-208)||(30495886-30496041)
chr3 (78-208)||(30536834-30536964)
[»] chr1 (11 HSPs)
chr1 (12-225)||(49048542-49048755)
chr1 (36-225)||(49063594-49063783)
chr1 (15-225)||(47840797-47841007)
chr1 (18-225)||(47830716-47830923)
chr1 (18-225)||(33477331-33477538)
chr1 (37-225)||(48005010-48005198)
chr1 (18-225)||(34506469-34506676)
chr1 (60-225)||(49045171-49045337)
chr1 (37-225)||(47826019-47826207)
chr1 (42-225)||(33467279-33467462)
chr1 (51-225)||(2540449-2540623)
[»] chr2 (4 HSPs)
chr2 (16-225)||(39705701-39705910)
chr2 (18-215)||(11619902-11620099)
chr2 (51-225)||(33238270-33238444)
chr2 (51-225)||(33246191-33246365)
[»] scaffold0121 (2 HSPs)
scaffold0121 (12-225)||(38892-39105)
scaffold0121 (12-225)||(34663-34876)
[»] chr5 (3 HSPs)
chr5 (36-225)||(19988017-19988206)
chr5 (51-225)||(22001859-22002033)
chr5 (51-225)||(22700435-22700609)
[»] chr8 (1 HSPs)
chr8 (18-225)||(16776583-16776790)
[»] chr7 (2 HSPs)
chr7 (42-199)||(22650239-22650396)
chr7 (104-225)||(22651959-22652080)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 9757674 - 9757891
Alignment:
Q  8 catcgtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9757674 catcgtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgag 9757773  T
Q  108 aatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9757774 aatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgc 9757873  T
Q  208 tctcgttgctcatctttt 225  Q
    ||||||||||||||||||    
T  9757874 tctcgttgctcatctttt 9757891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 20959911 - 20959704
Alignment:
Q  18 ttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacga 117  Q
    |||||||| ||||| ||  |||| ||||| || |||||||||||||||| ||||||||| |||||||||||||||||  | | ||||||||| |||||||    
T  20959911 ttgttttggggtgggacccgagagagataacgatctatgaccgtatcaacattggggtggccaaaggaaaataccttctctccaggtgagaaaacaacga 20959812  T
Q  118 gagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgct 217  Q
    ||||| |||||||||| || |||||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||    
T  20959811 gagcaacatctgcaccacagagggtgcaaagctcactggctttcttgaagagaccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgct 20959712  T
Q  218 catctttt 225  Q
    ||| ||||    
T  20959711 catttttt 20959704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 20973812 - 20973615
Alignment:
Q  20 gttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgaga 119  Q
    |||||| ||||| ||  |||| ||||| || |||||||||| ||||||||||||||| ||||| |||||||||||  | | ||||||||| |||| ||||    
T  20973812 gttttggggtgggacccgagagagataacgatctatgaccgcatcaagattggggtggccaaatgaaaataccttctctccaggtgagaaaacaatgaga 20973713  T
Q  120 gcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgct 217  Q
    ||| ||||||||||||| |||||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||    
T  20973712 gcaacatctgcaccgcatagggtgcaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgct 20973615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 30496447 - 30496597
Alignment:
Q  75 tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgc 174  Q
    |||||||| |||||||||||  ||||||||||||||| ||  |||| | ||| |||||| |||||||||||||||||||||||||||||||||||||| |    
T  30496447 tgaccaaatgaaaataccttctcactaggtgagaatataattagagtaacatatgcaccacaaagggtgcaaagctcgctagctttcttgaagagtccac 30496546  T
Q  175 tacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    || | ||||| ||||||||||||||||||||||| || |||||||||||||    
T  30496547 tatggcgcttcgagaaagtcacttgcaggttgctttcattgctcatctttt 30496597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 9761484 - 9761656
Alignment:
Q  42 agatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaaggg 141  Q
    |||||||| |||||||  ||||||| ||| || ||||| || ||||||||||||  |||||||||||||||||| |||||| ||||| |||| |||||||    
T  9761484 agatagcgatctatgattgtatcaacatttggatgaccgaaagaaaataccttttgactaggtgagaatacaactagagcaacatctacaccacaaaggg 9761583  T
Q  142 tgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgtt 214  Q
    |||||| ||| ||  ||||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||    
T  9761584 tgcaaaactcactgactttcttgaagagcccgctacgacactttgagaaagtcacttggaggtttctctcgtt 9761656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 30496041 - 30495886
Alignment:
Q  53 tatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcg 152  Q
    ||||||||| |||| | | || ||||||||  ||||||||||  ||| | ||||||||| ||  ||||||  || |||||  ||| ||||||||| || |    
T  30496041 tatgaccgtttcaacacttggctgaccaaataaaaataccttctcaccaagtgagaatataattagagcaagatatgcacgacaacgggtgcaaaacttg 30495942  T
Q  153 ctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgct 208  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  30495941 ctagctttcttgaagagcccactacgacgcttcgagaaagtcacttgcaggttgct 30495886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 30536834 - 30536964
Alignment:
Q  78 ccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctac 177  Q
    ||||| |||||||||||  ||| | ||||||||| ||  |||||| ||| ||| || |||||||||||||||||||||||| |||||||||| || |||     
T  30536834 ccaaatgaaaataccttctcaccatgtgagaatataattagagcaacatatgcgccacaaagggtgcaaagctcgctagctatcttgaagagcccactat 30536933  T
Q  178 gacgctttgagaaagtcacttgcaggttgct 208  Q
    |  ||||  | |||||||||||||| |||||    
T  30536934 ggagcttcaaaaaagtcacttgcagattgct 30536964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 49048755 - 49048542
Alignment:
Q  12 gtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49048755 gtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaata 49048656  T
Q  112 caacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctc 211  Q
    |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49048655 caacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagtccgctacgacgctttgagaaagtcacttgtaggttgctctc 49048556  T
Q  212 gttgctcatctttt 225  Q
    ||||||||||||||    
T  49048555 gttgctcatctttt 49048542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 36 - 225
Target Start/End: Complemental strand, 49063783 - 49063594
Alignment:
Q  36 agagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgc 135  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  49063783 agagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcaacatctgcaccac 49063684  T
Q  136 aaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    |||||||||||||||| || || ||||||||||| ||| || |  ||||||||||||| ||||||| ||||||||||||||| |||||||    
T  49063683 aaagggtgcaaagctcacttgccttcttgaagagcccgttatggtgctttgagaaagtaacttgcaagttgctctcgttgctaatctttt 49063594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 47840797 - 47841007
Alignment:
Q  15 ccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaa 114  Q
    ||||||||||||||||| ||  |||| ||||| || |||||||||||||||| ||||||||||||||| |||||||||||  | | ||||||||| ||||    
T  47840797 ccgttgttttgtggtggcactcgagagagataacgatctatgaccgtatcaacattggggtgaccaaatgaaaataccttctccccaggtgagaaaacaa 47840896  T
Q  115 cgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgtt 214  Q
    |||||||| |||||||||| || ||||||||||||||||| ||||||||||| || || ||||| ||||| |||||||||||||||| ||||||||||||    
T  47840897 cgagagcaacatctgcaccacagagggtgcaaagctcgctggctttcttgaaaagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgtt 47840996  T
Q  215 gctcatctttt 225  Q
    |||||| ||||    
T  47840997 gctcatttttt 47841007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 47830716 - 47830923
Alignment:
Q  18 ttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacga 117  Q
    |||||||| ||||| ||  |||| ||||| || |||||||||||||||| |||||| || ||||| ||||| |||||  | | |||||||||||||||||    
T  47830716 ttgttttggggtgggactcgagagagataacgatctatgaccgtatcaacattgggttggccaaatgaaaacaccttctctccaggtgagaatacaacga 47830815  T
Q  118 gagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgct 217  Q
    ||||| ||||||||||||| || ||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||    
T  47830816 gagcaacatctgcaccgcagagagtgcaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgct 47830915  T
Q  218 catctttt 225  Q
    ||| ||||    
T  47830916 catttttt 47830923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 33477538 - 33477331
Alignment:
Q  18 ttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacga 117  Q
    |||||||| ||||| ||  |||| ||||| |||||||||||||||| || ||  || || ||||| ||||| |||||  |||||||||||||||||| ||    
T  33477538 ttgttttggggtgggacttgagatagataacggtctatgaccgtataaacatctggatggccaaatgaaaacaccttatcactaggtgagaatacaatga 33477439  T
Q  118 gagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgct 217  Q
    |||||  || |||||| |||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||  ||||||||||||||    
T  33477438 gagcaatatatgcaccacaaagggtgcaaagctcgctggctttcttgaagaggccactacgacgcttcgagaaagtcacttgcaaattgctctcgttgct 33477339  T
Q  218 catctttt 225  Q
    ||| ||||    
T  33477338 catttttt 33477331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 48005198 - 48005010
Alignment:
Q  37 gagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgca 136  Q
    |||| ||||| || |||||||| ||||||| ||||||||| ||||| |||||||||||  | | ||||||| | |||||||||||| |||||||||||||    
T  48005198 gagagagataacgatctatgactgtatcaacattggggtggccaaatgaaaataccttctccccaggtgagtaaacaacgagagcaacatctgcaccgca 48005099  T
Q  137 aagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
     |||||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| || ||||||||||||||| ||||    
T  48005098 gagggtgcaaagctcactggctttcttgaagagaccactacggcgcttcgagaaagtcacttgcaagtggctctcgttgctcatttttt 48005010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 34506676 - 34506469
Alignment:
Q  18 ttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacga 117  Q
    |||||||| ||||| ||  |||| |||||||| ||||||| ||| |||| ||  ||||| ||||| ||||| |||||  |||||||||||||||||| ||    
T  34506676 ttgttttggggtgggacctgagatagatagcgatctatgatcgtctcaacatctgggtgcccaaatgaaaacaccttatcactaggtgagaatacaatga 34506577  T
Q  118 gagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgct 217  Q
    |||||  || |||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||  ||||||||||||||    
T  34506576 gagcaatatatgcaccacaaagggtgcaaagctcactagctttcttgaagaggccactacggcgcttcgagaaagtcacttgcaaattgctctcgttgct 34506477  T
Q  218 catctttt 225  Q
    ||| ||||    
T  34506476 catttttt 34506469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 49045337 - 49045171
Alignment:
Q  60 gtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctt 159  Q
    ||||||| ||| || ||||| || |||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||  || ||  |||    
T  49045337 gtatcaacatttggatgaccgaaagaaaataccttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaaattcactgactt 49045238  T
Q  160 tcttgaagagtccgctacgacgctttgagaaagtcacttgcagg-ttgctctcgttgctcatctttt 225  Q
    |||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  49045237 tcttgaagagcccactacgacgctttgagaaagtcacttgaaggtttgctctcgttgctcatctttt 49045171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 225
Target Start/End: Original strand, 47826019 - 47826207
Alignment:
Q  37 gagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgca 136  Q
    |||| ||||| || ||||||| |||||||| |||||| || ||||| |||||||||||  | | ||||||||| |||||||||||| |||||||||| ||    
T  47826019 gagagagataacgatctatgagcgtatcaacattgggttggccaaatgaaaataccttctctccaggtgagaaaacaacgagagcaacatctgcaccaca 47826118  T
Q  137 aagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
     | ||| |||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||||| ||||    
T  47826119 gatggtacaaagctcactagctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttt 47826207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 33467462 - 33467279
Alignment:
Q  42 agatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaaggg 141  Q
    ||||| || |||||||||||||||| ||| ||||||||||| ||||| |||||  |||||||||||||||||| |||||||  || |||||| |||||||    
T  33467462 agataacgatctatgaccgtatcaacatttgggtgaccaaatgaaaacaccttctcactaggtgagaatacaatgagagcaatatatgcaccacaaaggg 33467363  T
Q  142 tgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    ||||||||||||||||||||||||| || ||  | | | |||| ||||| |||||||||| |||||||||||||||||| ||||    
T  33467362 tgcaaagctcgctagctttcttgaataggccattgcaatgcttcgagaatgtcacttgcaagttgctctcgttgctcatttttt 33467279  T

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Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 2540623 - 2540449
Alignment:
Q  51 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagct 150  Q
    |||||||||||||||| |||||| || ||||| |||||||||||  | | ||||||||| | || ||||||| |||||||||| || || ||||||||||    
T  2540623 tctatgaccgtatcaacattgggttggccaaatgaaaataccttctccccaggtgagaaaataatgagagcaacatctgcaccacagagagtgcaaagct 2540524  T
Q  151 cgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    | || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||||| ||||    
T  2540523 cactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttt 2540449  T

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Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 39705910 - 39705701
Alignment:
Q  16 cgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaac 115  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  39705910 cgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactagttgagaatacaac 39705811  T
Q  116 gagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttg 215  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  39705810 gagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttg 39705711  T
Q  216 ctcatctttt 225  Q
    ||||||||||    
T  39705710 ctcatctttt 39705701  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 11620099 - 11619902
Alignment:
Q  18 ttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacga 117  Q
    |||||||| ||||| ||  |||| ||||| || |||||||||||||||| ||||||||| ||||| |||||||||||  | ||||||||||| ||||| |    
T  11620099 ttgttttggggtgggacccgagagagataacgatctatgaccgtatcaacattggggtggccaaatgaaaataccttctctctaggtgagaaaacaacaa 11620000  T
Q  118 gagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttg 215  Q
    ||||| |||||||||| || |||||||||||||| || ||||| |||||||| || ||||| ||||| |||||||||||||||| |||||||||||||    
T  11619999 gagcaacatctgcaccacagagggtgcaaagctcactggcttttttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttg 11619902  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 33238444 - 33238270
Alignment:
Q  51 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagct 150  Q
    ||||||||||| |||| ||| || | |||||| |||||||||||  |||||||||||||||  |  ||||||  || |||||| |||||||| |||||||    
T  33238444 tctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagagcaatatatgcaccacaaagggtacaaagct 33238345  T
Q  151 cgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    | || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||| || |||||||||||||    
T  33238344 cactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctttcattgctcatctttt 33238270  T

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Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 33246365 - 33246191
Alignment:
Q  51 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagct 150  Q
    ||||||||||| |||| ||| || | |||||| |||||||||||  |||||||||||||||  |  ||||||  || |||||| |||||||| |||||||    
T  33246365 tctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagagcaatatatgcaccacaaagggtacaaagct 33246266  T
Q  151 cgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    | || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||| || |||||||||||||    
T  33246265 cactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctttcattgctcatctttt 33246191  T

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Target: scaffold0121 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 39105 - 38892
Alignment:
Q  12 gtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaata 111  Q
    ||||| |||||||| ||||| || || |||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39105 gtgccattgttttggggtgggacgagggaaagataacagtatatgaccgtatcaagattggggtgaccaaaggaaaatagctttccactaggtgagaata 39006  T
Q  112 caacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctc 211  Q
    |||| ||||||||||||||||| ||||||||||||| ||| |  |||||||||||||| |||||||| | |||||||||||| ||||||| |||||||||    
T  39005 caacaagagcagcatctgcaccacaaagggtgcaaatctcaccggctttcttgaagagcccgctacggcactttgagaaagtaacttgcaagttgctctc 38906  T
Q  212 gttgctcatctttt 225  Q
    ||  ||||||||||    
T  38905 gtcactcatctttt 38892  T

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Target: scaffold0121; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 34876 - 34663
Alignment:
Q  12 gtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaata 111  Q
    |||| ||||||||||||||| ||   ||| |||||||| ||||| |||||||||| ||| || ||||| || |||||||| ||| |||||||||||||||    
T  34876 gtgctgttgttttgtggtgggaccccagagagatagcgatctataaccgtatcaacatttggatgaccgaaagaaaatactttttcactaggtgagaata 34777  T
Q  112 caacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctc 211  Q
    ||||||||||| ||||| |||| |||||||||||||||||  |  ||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||     
T  34776 caacgagagcaacatctacaccacaaagggtgcaaagctcattgactttcttaaagagtcccctacgacgctttgacaaagtcacttgaaggttactctt 34677  T
Q  212 gttgctcatctttt 225  Q
    ||||||||||||||    
T  34676 gttgctcatctttt 34663  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 225
Target Start/End: Complemental strand, 19988206 - 19988017
Alignment:
Q  36 agagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgc 135  Q
    ||||| ||||| || ||||||||||| |||| ||| ||||||||||| ||||| |||||  ||| ||||||||||| ||  |||||| ||| |||||| |    
T  19988206 agagagagataacgatctatgaccgtttcaacatttgggtgaccaaatgaaaagaccttctcaccaggtgagaatataattagagcaacatatgcaccac 19988107  T
Q  136 aaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    | |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||| || |||||||||||||    
T  19988106 acagggtgcaaagctcgctagctttcttgaagagcccactacgacgcttcgagaaagtcacttgaaggttgctttcattgctcatctttt 19988017  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 22002033 - 22001859
Alignment:
Q  51 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagct 150  Q
    ||||||||||| |||| ||| ||||||||||| |||||||||||| |||| |||||||| |  |  |||||| ||| |||||| |||||  |||||||||    
T  22002033 tctatgaccgtttcaacatttgggtgaccaaatgaaaataccttttcacttggtgagaagattattagagcaacatatgcaccacaaagactgcaaagct 22001934  T
Q  151 cgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    ||||||||||||||||||| || ||||| ||||| |||||||||||||| ||| |||| || |||||||||||||    
T  22001933 cgctagctttcttgaagagcccactacggcgcttcgagaaagtcacttgtaggctgctttcattgctcatctttt 22001859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 22700435 - 22700609
Alignment:
Q  51 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagct 150  Q
    ||||||||||| |||| ||| || | |||||| |||||||||||  ||||||||||||||| ||  ||||||  || |||||| ||||||||||||||||    
T  22700435 tctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatataattagagcaatatatgcaccacaaagggtgcaaagct 22700534  T
Q  151 cgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttt 225  Q
    |||||||||| || ||||| ||  |||| |||||||||||||||||||||| |||||| || |||||||||||||    
T  22700535 cgctagcttttttaaagagcccaatacggcgctttgagaaagtcacttgcaagttgctttcattgctcatctttt 22700609  T

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Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 16776583 - 16776790
Alignment:
Q  18 ttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacga 117  Q
    |||||||| ||||| ||  |||| ||||| || |||||||||||||||| |||||| || ||||| |||||||||||  | | ||||||||| ||||| |    
T  16776583 ttgttttggggtgggactcgagagagataacgatctatgaccgtatcaatattgggttggccaaatgaaaataccttctccccaggtgagaaaacaacaa 16776682  T
Q  118 gagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgct 217  Q
    ||||| |||||||||| || || ||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||    
T  16776683 gagcaacatctgcaccacagagagtgcaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgct 16776782  T
Q  218 catctttt 225  Q
    ||| ||||    
T  16776783 catttttt 16776790  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 22650396 - 22650239
Alignment:
Q  42 agatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaaggg 141  Q
    |||||||| ||||||||| |||||| ||| || ||||| || ||||||||||||  ||||||||||||||||||||||||| ||||| |||| |||||||    
T  22650396 agatagcgatctatgaccatatcaacatttggatgaccgaaagaaaatacctttttactaggtgagaatacaacgagagcaacatctacaccacaaaggg 22650297  T
Q  142 tgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttg 199  Q
    ||||||||||  |  ||||||||||||||||||||||| ||||| |||||||||||||    
T  22650296 tgcaaagctcattgactttcttgaagagtccgctacgatgctttaagaaagtcacttg 22650239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 22652080 - 22651959
Alignment:
Q  104 tgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcagg 203  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||| ||    | ||| |||||||||||||||||||||||| ||||||| |||||||||    
T  22652080 tgagaatacaacgagagcaacatctgcaccacaaagggtgtaaagttcatcggattttttgaagagtccgctacgacgctttaagaaagttacttgcagg 22651981  T
Q  204 ttgctctcgttgctcatctttt 225  Q
    ||||||||||||||||||||||    
T  22651980 ttgctctcgttgctcatctttt 22651959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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