View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5710-Insertion-8 (Length: 131)

Name: NF5710-Insertion-8
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5710-Insertion-8
NF5710-Insertion-8
[»] chr5 (3 HSPs)
chr5 (8-131)||(42884697-42884817)
chr5 (60-131)||(42875566-42875637)
chr5 (60-131)||(42889664-42889735)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 2e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 42884817 - 42884697
Alignment:
Q  8 gcaagcaaagcctactcaatcaccatcattcatcaagctatagcataattcactcaaagtgtaacaatcttaacattgaacctttgtccaacccaaaaat 107  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42884817 gcaagcaaagcctactcaatca---tcattcatcaagctatagcataattcactcaaagtgtaacaatcttaacattgaaccttagtccaacccaaaaat 42884721  T
Q  108 aacaacatgggcagtgttgaaatc 131  Q
    ||||||||||||||||||||||||    
T  42884720 aacaacatgggcagtgttgaaatc 42884697  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 42875637 - 42875566
Alignment:
Q  60 ctcaaagtgtaacaatcttaacattgaacctttgtccaacccaaaaataacaacatgggcagtgttgaaatc 131  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42875637 ctcatagtgtaccaatcttaacattgaaccttagtccaacccaaaaataacaacatgggcagtgttgaaatc 42875566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 42889664 - 42889735
Alignment:
Q  60 ctcaaagtgtaacaatcttaacattgaacctttgtccaacccaaaaataacaacatgggcagtgttgaaatc 131  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42889664 ctcatagtgtaccaatcttaacattgaaccttagtccaacccaaaaataacaacatgggcagtgttgaaatc 42889735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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