View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5710-Insertion-9 (Length: 130)
Name: NF5710-Insertion-9
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710-Insertion-9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 1e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 4460370 - 4460248
Alignment:
| Q |
8 |
cttactaattcattcaccatgttgctgccatgtctgtttgggaatctcaaagatggacgcctactttatattgttgatgatgttccacgcggccaccact |
107 |
Q |
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| T |
4460370 |
cttactaattcattcaccatgttgctgccatgtctgtttgggaatctcaaagatggacgcctactttatattgttgatgatgttccacgcggccaccact |
4460271 |
T |
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| Q |
108 |
ataagtctcctcctcctcctcgt |
130 |
Q |
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| T |
4460270 |
ataagtctcctcctcctcctcgt |
4460248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 4474005 - 4473923
Alignment:
| Q |
28 |
gttgctgccatgtctgtttgggaatctcaaagatggacgcctactttatattgttgatgatgttccacgcggccaccactata |
110 |
Q |
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| T |
4474005 |
gttgatgccatgttcgattggaaatctcaaagatggacggctactatatattgttaatgatcgtccacgcagccacaactata |
4473923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 4395657 - 4395617
Alignment:
| Q |
33 |
tgccatgtctgtttgggaatctcaaagatggacgcctactt |
73 |
Q |
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| T |
4395657 |
tgccatgtttgtttggaaatctcaaagatgaacgcctactt |
4395617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 18049669 - 18049709
Alignment:
| Q |
33 |
tgccatgtctgtttgggaatctcaaagatggacgcctactt |
73 |
Q |
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| T |
18049669 |
tgccatgtttgtttggaaatctcaaagatgaacgcctactt |
18049709 |
T |
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