View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5710_high_14 (Length: 228)
Name: NF5710_high_14
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 1936546 - 1936739
Alignment:
| Q |
17 |
catcatcattaaatccataaaactgatgtattgagactcctgtcctaaacatttaatacnnnnnnnn-cacgagtttaacacaaaaaagagagaatttag |
115 |
Q |
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| T |
1936546 |
catcatcattaaatccataaaactgatgtattgagactcgtgtcctaaacatttaacacaaaaaaaaacacgagtttaacacaaaaaagagagaatttag |
1936645 |
T |
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| Q |
116 |
cnnnnnnnnnn--tagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgag |
207 |
Q |
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| T |
1936646 |
cacaaaaaaaaaatagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgag |
1936739 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 34819621 - 34819695
Alignment:
| Q |
129 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
203 |
Q |
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| T |
34819621 |
gagaattgattcataaacatgcttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
34819695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 37863950 - 37864024
Alignment:
| Q |
129 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
203 |
Q |
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| T |
37863950 |
gagaattgattcataaacatacttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
37864024 |
T |
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