View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5710_high_2 (Length: 462)
Name: NF5710_high_2
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710_high_2 |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: scaffold0415 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 15079 - 15503
Alignment:
| Q |
17 |
tgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatc |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15079 |
tgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatc |
15178 |
T |
|
| Q |
117 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatatgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15179 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatatgc |
15278 |
T |
|
| Q |
217 |
ggaaaaatgtagaaatttcatatgatgtacgattcatttgaaggctctgattcagcaaacttttcacttttgtacactttttccatcgtttgatgtcttg |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15279 |
ggaaaaatgtagaaatttcatatgatgtacgattcatttgaaggctctgattcagaaaacttttcgcttttgtacactttttccatcgtttgatgtcttg |
15378 |
T |
|
| Q |
317 |
taaattttgtaaagtttagtaactagtgtttagctcagtttgtataaaaagatcatgagctagcttcatcaagatc-nnnnnnnnncactgagtttcatc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
15379 |
taaattttgtaaagtttagtaactagtgtttagctcagtttatataaaaagatcatgagctagcttcatcaagatcttttttttttcactgagtttcatc |
15478 |
T |
|
| Q |
416 |
aggatctgtaattagagaggtatgt |
440 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
15479 |
aggatctgtaattagagaggtatgt |
15503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 40817285 - 40816861
Alignment:
| Q |
17 |
tgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatc |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
40817285 |
tgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatc |
40817186 |
T |
|
| Q |
117 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatatgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40817185 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatatgc |
40817086 |
T |
|
| Q |
217 |
ggaaaaatgtagaaatttcatatgatgtacgattcatttgaaggctctgattcagcaaacttttcacttttgtacactttttccatcgtttgatgtcttg |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40817085 |
ggaaaaatgtagaaatttcatatgatgtacgattcatttgaaggctctgattcagaaaacttttcgcttttgtacactttttccatcgtttgatgtcttg |
40816986 |
T |
|
| Q |
317 |
taaattttgtaaagtttagtaactagtgtttagctcagtttgtataaaaagatcatgagctagcttcatcaagatc-nnnnnnnnncactgagtttcatc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40816985 |
taaattttgtaaagtttagtaactagtgtttagctcagtttatataaaaagatcatgagctagcttcatcaagatcttttttttttcactgagtttcatc |
40816886 |
T |
|
| Q |
416 |
aggatctgtaattagagaggtatgt |
440 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
40816885 |
aggatctgtaattagagaggtatgt |
40816861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 40807029 - 40806728
Alignment:
| Q |
17 |
tgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatc |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||| ||||| |
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|
| T |
40807029 |
tgtgtatagaaagaatcagtataggaaaatcatttgcttttaggattataaacaaagatggagaaatcattgcagaggcaaagcaaaaactgtcgtcatc |
40806930 |
T |
|
| Q |
117 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatatgc |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
40806929 |
cggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttataatggctttgataacggtctacggattgatatgc |
40806830 |
T |
|
| Q |
217 |
ggaaaaatgtagaaatttcata--tgatgtacgattcatttgaaggctctgattcagcaaacttttcacttttgtacactttttccatcgtttgatgtct |
314 |
Q |
| |
|
|| ||||||||| |||||||| ||| || ||||||||||||||| |||||| | |||||||| |||||| ||| |||||||| ||||| ||||| |
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|
| T |
40806829 |
ggtaaaatgtagttatttcatactatatgcacaattcatttgaaggctatgattcggaaaactttttgattttgttcacattttccattgtttgttgtct |
40806730 |
T |
|
| Q |
315 |
tg |
316 |
Q |
| |
|
|| |
|
|
| T |
40806729 |
tg |
40806728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 40825855 - 40825650
Alignment:
| Q |
13 |
aatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtctt |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40825855 |
aatatgtgcatagaaagaatcagcataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtctt |
40825756 |
T |
|
| Q |
113 |
catccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgat |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||| |||||||| || ||||| |
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|
| T |
40825755 |
catcaggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataatcgctctgatcacggtctatggtttgat |
40825656 |
T |
|
| Q |
213 |
atgcgg |
218 |
Q |
| |
|
|||||| |
|
|
| T |
40825655 |
atgcgg |
40825650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 40805305 - 40804988
Alignment:
| Q |
19 |
tgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatccg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| ||||||||||| || || | |
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|
| T |
40805305 |
tgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcatcgtcag |
40805206 |
T |
|
| Q |
119 |
gggttgttctgagtaatgatgttctaactttggatttggctgctggaacgga-------tcattcccttataatggctttgattacggtctacggattga |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||||||||| |||||||| |||| | |
|
|
| T |
40805205 |
gggttgttctaagtaatgatgttctaacgttggacttggccgctggaacggatcatgcatcatgcccttataatggctttgataacggtctatggatcaa |
40805106 |
T |
|
| Q |
212 |
tatgcggaaaaatgtagaaatttcatatgatg-tacgattcatttgaaggctctgattcagcaaacttttcacttttgtacactttttccatcgtttgat |
310 |
Q |
| |
|
||||||| | |||||| | |||||| ||| || |||||||||||||| || ||| ||||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
40805105 |
tatgcggcttattgtagatacttcatactatgcaacaattcatttgaaggcccttatttcaaaaacttttcgcttttgtacactttttccattgtttgct |
40805006 |
T |
|
| Q |
311 |
gtcttgtaaattttgtaa |
328 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
40805005 |
gtcttgtaagttttgtaa |
40804988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 40812126 - 40811925
Alignment:
| Q |
17 |
tgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatc |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| || || |
|
|
| T |
40812126 |
tgtgtatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggagaaatcattgctgaggcaaagcaaaaacagtcatcctc |
40812027 |
T |
|
| Q |
117 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatatgc |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||||||| | ||||||||| ||||| || |||||||||||| |
|
|
| T |
40812026 |
aggggttgttctgagtaacgatgttctaacgttggatttggccaccggcgtggatcattcccttattacggctttgataacggtatatggattgatatgc |
40811927 |
T |
|
| Q |
217 |
gg |
218 |
Q |
| |
|
|| |
|
|
| T |
40811926 |
gg |
40811925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 40811876 - 40811756
Alignment:
| Q |
248 |
attcatttgaaggctctgattcagcaaacttttcacttttgtacactttttccatcgtttgatgtcttgtaaattttgtaaagtttagtaactagtgttt |
347 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||| |||| | ||||||||||| |
|
|
| T |
40811876 |
attcattttaaggccctgattgggcaaactttttgcttttctacactttttccatcgtctgatgtcttgtaaa---------gttttgcaactagtgttt |
40811786 |
T |
|
| Q |
348 |
agctcagtttgtataaaaagatcatgagct |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40811785 |
agctcagtttgtataaaaagatcatgagct |
40811756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 377
Target Start/End: Complemental strand, 40806727 - 40806688
Alignment:
| Q |
338 |
actagtgtttagctcagtttgtataaaaagatcatgagct |
377 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
40806727 |
actagtatttagctcagtttgcataaaaagatcatgagct |
40806688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 7600 - 7903
Alignment:
| Q |
17 |
tgtgcatagaaagaatcagtataggaaaatcatttgctttt-aggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaa-cagtcttca |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||| | ||| ||| |
|
|
| T |
7600 |
tgtgtatagaaagaatcagtataggaaaatcatttgctttttaggattataaacaaagatggagaaatcattgcagaggcaaagcaaaaaactgtcgtca |
7699 |
T |
|
| Q |
115 |
tccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatat |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7700 |
tccggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttataatggctttgataacggtctacggattgatat |
7799 |
T |
|
| Q |
215 |
gcggaaaaatgtagaaatttcata--tgatgtacgattcatttgaaggctctgattcagcaaacttttcacttttgtacactttttccatcgtttgatgt |
312 |
Q |
| |
|
|||| ||||||||| |||||||| ||| || ||||||||||||||| |||||| | |||||||| |||||| ||| |||||||| ||||| ||| |
|
|
| T |
7800 |
gcggtaaaatgtagttatttcatactatatgcacaattcatttgaaggctatgattcggaaaactttttgattttgttcacattttccattgtttgttgt |
7899 |
T |
|
| Q |
313 |
cttg |
316 |
Q |
| |
|
|||| |
|
|
| T |
7900 |
cttg |
7903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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