View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5710_high_5 (Length: 372)

Name: NF5710_high_5
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5710_high_5
NF5710_high_5
[»] chr3 (3 HSPs)
chr3 (16-358)||(9757338-9757680)
chr3 (161-216)||(9761259-9761314)
chr3 (155-216)||(20973960-20974021)
[»] chr1 (9 HSPs)
chr1 (17-354)||(49048757-49049094)
chr1 (23-354)||(49063809-49064140)
chr1 (133-216)||(47840571-47840654)
chr1 (133-216)||(2540802-2540885)
chr1 (133-216)||(47825771-47825854)
chr1 (145-216)||(47830499-47830570)
chr1 (133-216)||(48005363-48005446)
chr1 (133-216)||(49045520-49045603)
chr1 (17-114)||(47840431-47840528)
[»] chr2 (2 HSPs)
chr2 (17-353)||(39705917-39706253)
chr2 (133-216)||(11620245-11620328)
[»] scaffold0121 (3 HSPs)
scaffold0121 (228-354)||(39107-39233)
scaffold0121 (133-216)||(35016-35099)
scaffold0121 (17-101)||(35155-35239)
[»] chr7 (1 HSPs)
chr7 (120-216)||(22650566-22650662)
[»] chr8 (1 HSPs)
chr8 (136-354)||(16776357-16776575)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 9757338 - 9757680
Alignment:
Q  16 atgtgatggaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9757338 atgtgatggaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagtt 9757437  T
Q  116 gtagcatgttgatttagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaa 215  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9757438 gtagcatgttgaattagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaa 9757537  T
Q  216 aatttgcctccgtttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagccatccgagcattgagttc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9757538 aatttgcctccgtttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagtcatccgagcattgagttc 9757637  T
Q  316 acgaacgttggcattgcggtgagcctcaatgagttgcatcgtg 358  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9757638 acgaacgttggcattgcggtgagcctcaatgagttgcatcgtg 9757680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 9761259 - 9761314
Alignment:
Q  161 ttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||||||||||||| || || ||||||| |||| || ||||||||||||||||||    
T  9761259 ttgaataattcaagtcgagccctattcatcccattaatcggacaagcccaccaaaa 9761314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 20974021 - 20973960
Alignment:
Q  155 gcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||| |||||||||||||||||  ||| |||||| |||||||  |||| ||||||||||||    
T  20974021 gccttcttgaataattcaagttgggcctgattcatcccatcaatgggaccagcccaccaaaa 20973960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 49049094 - 49048757
Alignment:
Q  17 tgtgatggaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagttg 116  Q
    |||| ||| |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49049094 tgtggtggcaacatttcagcttgttgagcatttggctgatgatggagataaacgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagttg 49048995  T
Q  117 tagcatgttgatttagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49048994 tagcatgttgaattagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatctttattcattccatcaaccggacaagcccaccaaaa 49048895  T
Q  217 atttgcctccgtttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagccatccgagcattgagttca 316  Q
    ||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||| |||| ||||||||||||||    
T  49048894 attagcctctgtttccttgagaaaatggctcagctcatcgccaatcttcttctcggcatccaacgtgttgttgatttgagtcatctgagcattgagttca 49048795  T
Q  317 cgaacgttggcattgcggtgagcctcaatgagttgcat 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49048794 cgaacgttggcattgcggtgagcctcaatgagttgcat 49048757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 23 - 354
Target Start/End: Complemental strand, 49064140 - 49063809
Alignment:
Q  23 ggaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagttgtagcat 122  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||| | |||||    
T  49064140 ggaaacatttcagcttgttgaggatttggttgatgatggagataaatgttcgaggatgaagtgttgccaacaaaaaatggaagagttcgagtagcagcat 49064041  T
Q  123 gttgatttagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaaatttgc 222  Q
    | ||| ||| ||||||||||||||||||||| || || || |||| ||||||||||||| ||||||| ||||||||   ||||||||||||||| || ||    
T  49064040 gctgaattacaagtttcttaagctcctccaaagctttcttaaatatttcaagttgatccctattcatcccatcaacaacacaagcccaccaaaacttagc 49063941  T
Q  223 ctccgtttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagccatccgagcattgagttcacgaacg 322  Q
    ||| ||||||||| |||||| ||||||||||||  ||||||||||||| |||||||  ||||| |||||||||| || | |||||||||||||||| |||    
T  49063940 ctcagtttccttgtgcaaattgctcagctcatcaccaatcttcttctcggcatccaacgtgttattgatttgagtcagctgagcattgagttcacgcacg 49063841  T
Q  323 ttggcattgcggtgagcctcaatgagttgcat 354  Q
    ||||||||||||||||||||||||| ||||||    
T  49063840 ttggcattgcggtgagcctcaatgaattgcat 49063809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 47840571 - 47840654
Alignment:
Q  133 aagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||||||||| |||| |||| ||||| |||||||||||||||||  || ||||||| |||||||| |||| ||||||||||||    
T  47840571 aagtttcttaacctcccccaaagccttcttgaataattcaagttggaccctattcatcccatcaacgggaccagcccaccaaaa 47840654  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 2540885 - 2540802
Alignment:
Q  133 aagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||||||||| ||||||||| ||||||||||| | |||||||||  || ||||||| |||||||| | || ||||||||||||    
T  2540885 aagtttcttaatctcctccaaagcctttttgaaaacttcaagttgggccctattcatcccatcaacggaaccagcccaccaaaa 2540802  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 47825771 - 47825854
Alignment:
Q  133 aagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    |||||||  |||| ||||||| ||||||||||| ||||||||||| ||| || |||| |||| ||| |||| ||||||||||||    
T  47825771 aagtttcgaaagcgcctccaaagcctttttgaaaaattcaagttggtccctactcatcccattaacaggaccagcccaccaaaa 47825854  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 47830499 - 47830570
Alignment:
Q  145 ctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||||||| ||||||||||| |||||||||||  |  ||||||| |||||||| |||| ||||||||||||    
T  47830499 ctcctccaaagcctttttgaaaaattcaagttgggctctattcatcccatcaacaggaccagcccaccaaaa 47830570  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 48005446 - 48005363
Alignment:
Q  133 aagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    |||||||||||||||||||||  | || |||||||||||||||||  || | ||||| |||||||| |||| | ||||||||||    
T  48005446 aagtttcttaagctcctccaaatcattcttgaataattcaagttggaccctgttcatcccatcaacgggaccatcccaccaaaa 48005363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 49045603 - 49045520
Alignment:
Q  133 aagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||||||||||||||  |||   ||| |||||||||||||||||  || ||||||| |||| || ||||||||||||||||||    
T  49045603 aagtttcttaagctccaacaaaatcttcttgaataattcaagttgtgccctattcatcccattaatcggacaagcccaccaaaa 49045520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 47840431 - 47840528
Alignment:
Q  17 tgtgatggaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagt 114  Q
    |||| |||| |||||| ||  ||| ||| |||||| ||||||||||||   ||||| ||||| ||| |||| ||||||||||||||||||||| ||||    
T  47840431 tgtgttggatacatttgagcctgtggaggatttggttgatgatggagagggatgttagaggatgaaccatttccaacaaaaaatggaagagtttgagt 47840528  T

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Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 39706253 - 39705917
Alignment:
Q  17 tgtgatggaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagttg 116  Q
    |||| ||||||||||| || |||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || | |    
T  39706253 tgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgaatag 39706154  T
Q  117 tagcatgttgatttagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||||| ||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  39706153 tagcatgctgaattacaagtttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcataccatcagccggacaagcccaccaaaa 39706054  T
Q  217 atttgcctccgtttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagccatccgagcattgagttca 316  Q
     || ||||  ||||||||| |||||| ||||||||||||  |||||||||||||||| ||||||||| |||||||||||| || | ||||||||||||||    
T  39706053 cttagcctgggtttccttgtgcaaattgctcagctcatcaccaatcttcttctcagcctccagtgtgctgttgatttgagtcagctgagcattgagttca 39705954  T
Q  317 cgaacgttggcattgcggtgagcctcaatgagttgca 353  Q
    || |||||||| ||||||||||||||||||| |||||    
T  39705953 cgcacgttggcgttgcggtgagcctcaatgaattgca 39705917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 11620328 - 11620245
Alignment:
Q  133 aagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    ||||||||||||||| ||||  ||||| |||||||||||||||||  || ||||||| |||||||| |||| ||||||||||||    
T  11620328 aagtttcttaagctcatccagagccttcttgaataattcaagttgggccctattcatcccatcaacgggaccagcccaccaaaa 11620245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 354
Target Start/End: Complemental strand, 39233 - 39107
Alignment:
Q  228 tttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagccatccgagcattgagttcacgaacgttggc 327  Q
    |||||||| |||||| ||||||||||||  |||| |||||||| |||| ||   |||| |||||||||| || | ||||||||||||| || ||||||||    
T  39233 tttccttgcgcaaattgctcagctcatcaccaattttcttctcggcatgcatcatgttattgatttgagtcaactgagcattgagttcgcgcacgttggc 39134  T
Q  328 attgcggtgagcctcaatgagttgcat 354  Q
    |||||||| ||||||||||| ||||||    
T  39133 attgcggttagcctcaatgaattgcat 39107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 35099 - 35016
Alignment:
Q  133 aagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    |||||||||||||||| | ||   ||| |||||||||||||||||| || ||||||| ||| |||  |||||||||||||||||    
T  35099 aagtttcttaagctccactaaaatcttcttgaataattcaagttgagccctattcatcccaccaattggacaagcccaccaaaa 35016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 35239 - 35155
Alignment:
Q  17 tgtgatggaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatg 101  Q
    |||| |||||||||||||| |||||||| ||||||||||| |||||||   ||||| |||||  || |||| ||| |||||||||    
T  35239 tgtggtggaaacatttcagtttgttgaggatttggctgataatggagagggatgttagaggataaatcattaccagcaaaaaatg 35155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 22650662 - 22650566
Alignment:
Q  120 catgttgatttagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaa 216  Q
    |||||||||| | |||||||||||||||| ||||   ||| |||||||||||||| ||| |||||||||||||||||| |||| |||||||||||||    
T  22650662 catgttgattaacaagtttcttaagctccaccaacatcttcttgaataattcaagctgagccttattcattccatcaatcggataagcccaccaaaa 22650566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 354
Target Start/End: Original strand, 16776357 - 16776575
Alignment:
Q  136 tttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaaatttgcctccgtttccttg 235  Q
    |||||||  ||||||||| ||||||||||| |||||||||||  || ||||||| |||||||| |||| |||||||||||| |  ||||| ||  |||||    
T  16776357 tttcttagtctcctccaaagcctttttgaaaaattcaagttgggccatattcatcccatcaacgggaccagcccaccaaaattgagcctcggtcgccttg 16776456  T
Q  236 agcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagccatccgagcattgagttcacgaacgttggcattgcggt 335  Q
     |||| || |||||||| ||  ||   ||||||||    ||||||   | |||||| |||| || | | | |||||| ||||  |||||||| |||||||    
T  16776457 cgcaagtgactcagctcttcagcacgtttcttctccatgtccagtagctggttgatctgagtcagctgggtattgagctcacacacgttggcgttgcggt 16776556  T
Q  336 gagcctcaatgagttgcat 354  Q
    |||||||||||| ||||||    
T  16776557 gagcctcaatgaattgcat 16776575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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