View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5710_high_9 (Length: 259)
Name: NF5710_high_9
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 7090033 - 7089793
Alignment:
| Q |
1 |
cacagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgt |
100 |
Q |
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| T |
7090033 |
cacagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgtgcacttgt |
7089934 |
T |
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| Q |
101 |
agcttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089933 |
agcttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaag |
7089834 |
T |
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| Q |
201 |
caggtaannnnnnnnnncttttcactttatttatgtatttgatttg |
246 |
Q |
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| T |
7089833 |
caggtaatttttt-----ttttcactttatttatgtatttgatttg |
7089793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 7669857 - 7669653
Alignment:
| Q |
3 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
102 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
7669857 |
cagagtcaatgggctaacttacctcctgagttactattagacataattcaaagggtggaagctagtgaaaccacttggccatctctccgcgcacttgtag |
7669758 |
T |
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| Q |
103 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
202 |
Q |
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| T |
7669757 |
cttgtgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcattgaagca |
7669658 |
T |
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| Q |
203 |
ggtaa |
207 |
Q |
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||||| |
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| T |
7669657 |
ggtaa |
7669653 |
T |
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