View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5710_low_11 (Length: 250)
Name: NF5710_low_11
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42638280 - 42638519
Alignment:
| Q |
1 |
ttgaagaaagtcttgtgtcaatcccatactttcgtcagaaaactaatacaaatttagcaaccaggtattcatttaccttcttgaattccagtttcaagta |
100 |
Q |
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| T |
42638280 |
ttgaagaaagtcttgtg--agtcccatactttcgtcaaaacactaatgcaaatttggcaaccagatattcatttaccttcatgaattccagtttcaagta |
42638377 |
T |
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| Q |
101 |
ctctgccatatcataacttttaatgatacgaaaaagtgtggtgatgatatctgtgggggaatatcccaagtcatacaattgcttgagcccagaacaagcc |
200 |
Q |
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| T |
42638378 |
ctctgccatatcataactttttatgatacgaaaaagtgtggtgatgatatctgtgggggaatatcccaagtcatacaattgcttgagcccagaacaagcc |
42638477 |
T |
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| Q |
201 |
tcatcgaaattcccttcaatcacattacgcaccatattcttc |
242 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42638478 |
tcatcgaaattcccttcaatcacattgcgcaccatattcttc |
42638519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 42566552 - 42566433
Alignment:
| Q |
123 |
atgatacgaaaaagtgtggtgatgatatctgtgggggaatatcccaagtcatacaattgcttgagcccagaacaagcctcatcgaaattcccttcaatca |
222 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42566552 |
atgatatgaaaaattgtggtgatgatatctgtgggggaatatcccaagtcatacaattgcttgagcccagaacaagcctcatcgaaattcccttcaatca |
42566453 |
T |
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| Q |
223 |
cattacgcaccatattcttc |
242 |
Q |
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|||||||||||||||||||| |
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| T |
42566452 |
cattacgcaccatattcttc |
42566433 |
T |
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