View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5710_low_12 (Length: 238)
Name: NF5710_low_12
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21348487 - 21348268
Alignment:
| Q |
1 |
aaactaattctcagaagggtggaggtatttttgacggcggtggcgaactgaaaggggtgaattaaagggagtgtgattacaaacggtgtgagtgttttta |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
21348487 |
aaactaattctcagaacggtggaggtatttttgacggcggtgacgaactgaaagggatggattaaagggagtgtgattacaaacagtg--agtgttttta |
21348390 |
T |
|
| Q |
101 |
aaatggtggacatataactcacagcaattgtactccattcttcatcttcatttcatcccaaaaagacccagaaacttcaattcaaactctggaaaagaaa |
200 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21348389 |
aaatagtggacatataactcatagcaattgtactccatttttcatcttcgtttcatcccaaaaaaacccagaaacttcaactcaaactctggaaaagaaa |
21348290 |
T |
|
| Q |
201 |
taaaaggaaacaagaattattt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21348289 |
taaaaggaaacaagaattattt |
21348268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 50724057 - 50724252
Alignment:
| Q |
1 |
aaactaattctcagaagggtggaggtatttttgacggcggtggcgaactgaaaggggtgaattaaagggagtgtgattacaaacggtgtgagtgttttta |
100 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50724057 |
aaactaattctcagaacggtgaagttatttttgacggcggtggcgaactgaaaggggtggattaaagggagtgtgattacaaacactgtgagtgttttta |
50724156 |
T |
|
| Q |
101 |
aaatggtggacatataactcacagcaattgtactccattcttcatcttcatttcatcc---caaaaagacccagaaacttcaattcaaactctggaa |
194 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||| ||||| ||||||| |
|
|
| T |
50724157 |
aaatggtggacatataactcaca-caattgtactccattcttcatctttgtttcatccaaaaaaaaaaacccaaaaacttcaactcaaattctggaa |
50724252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 50788792 - 50788596
Alignment:
| Q |
1 |
aaactaattctcagaagggtggaggtatttttgacggcggtggcgaactgaaaggggtgaattaaagggagtgtgattacaaacggtgtgagtgttttta |
100 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50788792 |
aaactaattctcagaacggtgaagttatttttgacggcggtggcgaactgaaaggggtggattaaagggagtgtgattacaaacactgtgagtgttttta |
50788693 |
T |
|
| Q |
101 |
aaatggtggacatataactcacagcaattgtactccattcttcatcttcatttcatccc----aaaaagacccagaaacttcaattcaaactctggaa |
194 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || ||||| ||||| ||||||||| ||||| ||||||| |
|
|
| T |
50788692 |
aaatggtggacatataactcaca-caattgtactccattcttcatctttgtttcataccaaaaaaaaaaacccaaaaacttcaactcaaattctggaa |
50788596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University